LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g4975	ATGGAACGCGAGGAGGGAAAACAATCTTCTCAAAAAAATCCTTACACAGAACTTGAGGAAGTTAGCTCCGATTTTATTCTAGCAATTGGTTTGCAAGAACAAGAGTTAGAGAGAACAACATTCACAAACCTAGCAACCATTGAAAGTGAAAGCGACGAAGATGTAACTGAGTCATCTTTTAGCAATGATGATATTGGTGATGCCGATTTTTCATTTAGTCAAGAGTTTGAAACCGATCTTCAATTTCTTGAAGGTGAAGGAAGTAATATTGATGATGACGACGATGACTACGATGAAATGGAAGAAGATGAAATTGATCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTAGGAGATTTTATAGGAGAAGAAAAAAGAGGATTATCACCTAATGAAATATCTTCTTGCTTATATCCTTATACTTGCAAAATTGCTGAAAGAAAAAGTGGAATTGATCGTTGTGTGATTTGTCAAATTGAATATGAAGATGGTGAAGCCTTAGTTACACTTCATTGTGATCATCCTTATCATACAGATTGTATAAGCAAATGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCAAACAAGGCTAAGAGCACTTGA	627	0.3477	MEREEGKQSSQKNPYTELEEVSSDFILAIGLQEQELERTTFTNLATIESESDEDVTESSFSNDDIGDADFSFSQEFETDLQFLEGEGSNIDDDDDDYDEMEEDEIDPDELSYEELIELGDFIGEEKRGLSPNEISSCLYPYTCKIAERKSGIDRCVICQIEYEDGEALVTLHCDHPYHTDCISKWLQIKKVCPICSNEVSTPNKAKST*	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g4975	208	SUPERFAMILY	RING/U-box	154	202	-	-
	Tpr2g4975	208	ProSiteProfiles	Zinc finger RING-type profile.	155	196	IPR001841	-
	Tpr2g4975	208	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	1	204	IPR045191	GO:0061630
	Tpr2g4975	208	PANTHER	E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE	1	204	-	-
	Tpr2g4975	208	SMART	ring_2	155	195	IPR001841	-
	Tpr2g4975	208	MobiDBLite	consensus disorder prediction	46	68	-	-
	Tpr2g4975	208	Pfam	Ring finger domain	154	195	IPR001841	-
	Tpr2g4975	208	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	142	208	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g4975	Tpr-Chr2	55525312	55526417	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g4975	102	199	C3H Transcription Factor Family	AT3G63530	48.515	3.73e-29	107

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g4975	K19045		-	gmx:100526881	298.13