Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4966 ATGAATTCACCATCCGCGCAGTTTGTTTCCTCGAGAAGGATGAGTGTGTATGATCCTATTCACCAGATTAATATGTGGGGAGAAGGTTTCAAAAGTAACGGAAATTTAAGCGCATCCATACCGTTAATTGATGAGGTGGACTTGAAGTTTGATAGTAGTCAGTCAGAAGATGCTTCTCATGGTATACTCGGAACATCTAATAAGTATGATCAAGAAGCTAGTAGACCTATTGATAAGATACAAAGACGGCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTCTGAGGAAAAAGGCTTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGGTGCAGTTGGAGCAAGAGCTTGAACGCGTAAGACAGCAGGGAATGTATATGAATGGTGGATTGGATTCGAATAATATGTGTTTTGCAGGACCTATGAATTCAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACAGGCAAATCTCGGAAATGAGAAGTGCTTTAAACTCGCATATTAGTGACATAGAGCTCAGGATTCTGGTTGATGGTATGATGAATCACTATGCTGAAATCTATCGGATGAAGTCTGCGGCTGCAAAAGCCGATGTATTTTATGTTATGTCCGGCATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATCGGTGGTTTTCGTCCCTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAACCCTTGACAGAGCAGCAACGATTGGATATTGATAACCTCGGACAATCATGTCAACAAGCAGAAGATGCTCTTTCACAAGGCATGGAAAAACTCCGGCAAACACTCGCTGATAGTGTAGCAGCTGGACAATTCATTGAAGGAACGTATATTCCGCAGATGGCCACTGCAATGGAGAAGTTAGAAGCTCTTGTGTGCTTTGTGAATCAGGCTGACCATCTTCGGCAGGAAACCTTGCAGCAAATGTCGCGAATACTTACAATCCGTCAGTCAGCTCGATGCTTACTTGCTTTAGGAGAATATTTCCAACGCCTAAGGGCTTTAAGCTCACTATGGTCTAATCGACCCCGTGAACCTGCTTAG 1092 0.4341 MNSPSAQFVSSRRMSVYDPIHQINMWGEGFKSNGNLSASIPLIDEVDLKFDSSQSEDASHGILGTSNKYDQEASRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMNGGLDSNNMCFAGPMNSGIAAFEMEYGHWVDEQNRQISEMRSALNSHISDIELRILVDGMMNHYAEIYRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFIEGTYIPQMATAMEKLEALVCFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4966 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 362 - -
Tpr2g4966 363 Pfam bZIP transcription factor 79 117 IPR004827 GO:0003700|GO:0006355
Tpr2g4966 363 PANTHER TRANSCRIPTION FACTOR TGA1 1 362 - -
Tpr2g4966 363 MobiDBLite consensus disorder prediction 55 71 - -
Tpr2g4966 363 SMART brlzneu 75 139 IPR004827 GO:0003700|GO:0006355
Tpr2g4966 363 Coils Coil 98 125 - -
Tpr2g4966 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Tpr2g4966 363 MobiDBLite consensus disorder prediction 54 75 - -
Tpr2g4966 363 Gene3D - 78 129 - -
Tpr2g4966 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 121 IPR004827 GO:0003700|GO:0006355
Tpr2g4966 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Tpr2g4966 363 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Tpr2g4966 363 SUPERFAMILY Leucine zipper domain 79 121 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4966 Tpr-Chr2 55448280 55451379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4966 1 363 Calmodulin-binding Proteins AT5G65210 68.478 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tpr2g4966 DOG1 9.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4966 K14431 - gmx:100793353 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4966 2 55448280 55451379 Tpr2g4966 2 55448280 55451379 ECH
Tpr3g0919 3 8514225 8517078 Tpr2g4966 2 55448280 55451379 ECH
Tpr3g0919 3 8514225 8517078 Tpr2g4966 2 55448280 55451379 PCT