Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4957 ATGGCCGCCGCAATCACTTGGAGATTTTCCGGCAACAATGGCACCACCCTTGCTTCTAATGATTTGGAAAGAAATGGTAATGGCAAGGCTCAAGATTCAGAGGCTCCAACTCCCCATTCTGTTCCGAAAATGGGATTGAGAGAACGTAGCAGCAGCGGGATGGAGGATGCAGATGGGACATTAGCAAGTATTGCCCAATGCATTGAGAAGCTACGTCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCCTTGAAGCAATTATCTGAGCTTATTGATACACGTGAAAATGCCTTTAGTGCAGTTGGATCTCATTCTCAAGCAGTTCCGGTGCTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAATTAAGGGTGAAAGTCTTGCTTGGAGGATGTATTCCTCCTTTGCTCGGTCTACTAAAGTCCAGTTCTGAAGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTTCTGTCTCTCAAGGTGATGCCAAAGATCATGTTGGATCAAAAATATTTTCTACTGAAGGAGTTGTTCCAGTGCTCTGGGAACAGCTGCAGAAGGGCCTAAAGAGTGGAAGTGTAGTAGATAGTTTATTGACTGGAGCATTGAAAAATCTCTACAGCAGTACTGAGAGATTCTGGAATTCGACAATACAGGCTGGAGGAGTGGACATATTGCTGAAGTTACTGACAACAGGACAGTCTAGCACTTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAAGATGCAGCTTTTTGTTCAAAGGTATTGGCAGCAGATGCAACAAAACAGCTCCTCAAACTTTTAGGCCCTGTTAATGATGCCCCAGTTAGAGCTGAAGCTGCTGGTGCTCTTAAATCTCTATCAGCACAGTGCCAAGATGCAAGGAAAGAGATAGCCAACTGTAATGGCATTCCTGCTTTAATTAATGCTACCATCGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCGATACAGGAGAATGCTATGTGTGCTCTTGCAAACATCTCTGGCGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAGTCATGCTCCTCACCGACCCAAACTGCTGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCAAATAGAGCATCAGATCCTTTGGCAGTTGAGCAGACATTACTTGAGCAATTCACACCACGATCGCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCTCTTGCTAGTTTGTATGGAAATCCTATACTCTCACTGAAACTAGCAAATTCTGATGCAAAGCGTCTGCTTGTTGGTCTAATAACAATGGCCGCTAATGAAGTGCAAGATGAACTTCTAAAAGCTCTCTTGACACTGTCCAATAGTGAGTGTAGTCTATGGCGTGCACTTCAAAGCCGTGAAGGAGTTCAGCTATTAATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAATGTGCTGTTGCCCTGCTCTGTCTTTTGTCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAGATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCGGCAACAATCCTCAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCAGTTCCTGCATTGTTGTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACCTTGAATCACTTAATTCATAAATCTGATACGGCAACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAGTCTAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTTCTCTTAGTGACCTTCTACGTGAAGGTAGTGCTGCCAATGATGCGATCAATACAATGATTAAGTTATTGAGCTCTACAAAGGAAGAAACTCAGGCAAAGTCAGCATCAGCTTTGTCAGGAATTTTTGAAACAAGGAAAGATTTGAGAGAAAGCAATATTGCTGTTAAAACTCTTCGGTCAGCCATGAAGTTGCTTAATATTGAATCTGGAAGTATCTTAGTGGAGTCCTCACGCTGCTTAGCTGCAATATTTCTTTCCATCAAAGAAAACAGAGAGGTGGCTGCTAATGCTAGTGATGCATTATCCTCCCTAGTTGCACTAGCTAGCTCTTCAGATTTGGAAGTAGCAGAACTGGCAACATGTGCTGTGGCAAACCTGTTTTTGGATAGTGAAATTGCTGAGGATGCTGTTGCGGAGGAAGTTATTTTGCCTGCTACCAGAGTATTGCGTGAAGGCACAAAATCTGGAAAAACACATGCAGCAGCAGCAATTGCCCGCCTTTTGCATTCTAGGCAAGTTGATTATGCTGTAAATGATTGTGTGAATCGTGCCGGTACTGTTCTTGCATTAGTTTCTTTCTTAGGTTCTGTTATTAATGAACCTGTTGCGACAGCAGAGGCTCTAGAAGCACTTGCCATTCTGTCCAGGTTGAAAGAGACCACTGCACTTAGTAAACCTGCTTGGAGGATTTTGGTCGAATTCCCTAAAAGCATAACCCCGGTAGTTCTGTCAATTGCTGATTCAACACCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTCTGTGTTAGGAGAGACTGTTGCTACTGCATCTGGATGTATATCTTCAATAGCTAAGAGGATCATCAATTCCACTTCTACAAATATGAAGGTCAAAATTGGGGGAGCTGCAATTCTTATTTGTGCTGCTAAAGAAAATCACCAGAGGCTTGTGGAGGATCTAAATATATCAAACTTGTGTGCTAATCTTGTACAGTCGCTTGTTGATATGCTAATTTCTGCACAGGCTACTTTAGTTAATCAGGACTCTGTCAATAAGGAAGTCATCAGCATTTGCAGGTATACGAAAGACGCCAATGATTGTAAATCGACCAACATCACCACCATTATATCTGGTGCTGATGTAGCTTTATGGTTACTGTCTGTTCTTGCTTGTCATGACGAAAAAAGTAAAATTGCAATAATGGAGGCTGGAGCTATTGAGATTCTCACAGACAGGATTGCAAATTTTTCCTCACAATACAGCCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTATGTTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACAATGATATCTATACCAGCCCTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTATCTGTGGCAAATTCTGGTGTGGCAGGTGGACTTATCTCCTTGCTAGGCTGTGCTGATGTTGATATAGAGGATCTTCTGGAATTGTCAAATGAATTTTCATTGGTGCCATATCCTGATCAAGTTGCCCTTGAGAGGTTGTTTAGAGTTGATGACATCAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCTGATCGCCCAGGAGCACCATTTTTAGCACTTGGGATTTTGACTGACCTTGCTAGAGATTGTCCATCAAATAAGATTGTAATGGTAGAGTCTGGGGCCATAGAGGCACTTACCAAGTATCTTTCACTGGGTCCACAAGATGCAATTGAAGAAGCTGCTACAGATCTGTTAGGAATTTTGTTTAGTAGTGCTGAGATAAGGAAACATGAGTCAGCATTTGGTGCGGTAGCTCAACTTGTAGCTGTGCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCCAAAGCCTTGGAAAGTTTATTTTTGGCTGACAACATTAGAAATGCAGAGACAGCCCGACATGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTCAGAGAGAGAGCAACATGCTGCGATTGCTGCGTTAGTTAAGTTACTGAGTGAAAATCCTTCAAGAGCACTGGCTGTTGCTGATGTTGAGATGAATGCCATTGATGTTCTTTGCAGAATTCTTTCATCAGACTGTTCAATGGACCTCAAAGGGGATGCTGCGGAATTATGTTGTGTTCTTTTTGGAAATACAAGGATTCGATCCACAATGGCTGCTGCACGGTGTGTTGAACCTCTGGTCTCTCTCCTTGTGAGTGAGTTTAGTCCAGCTCATCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGGTGATGAGCAATTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTCGTTGGCCTACTTTTTGGAAGGAACTTTGTACTTCATGAGGCCATTTCCAGAGCACTGGTCAAGTTAGGAAAAGATCGACCTGCGTGTAAAATGGAAATGGTGAAATCTGGAGTCATTGAAAGCATACTTGACATCCTTCATGAAGCACCCGATTATCTCTGTGCAGCATTTGCTGAATTGTTACGTATATTGACTAATAATGCTAGCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCCCTGTTCTTTTTGCTAACAAGACAAGAATTTGGGCCCGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCGCAATGCCGTGCTGATTACACATTAACTTCCCACCAAGCTATTGAACCACTCATCCCCTTGCTTGATTCTCCAATAGAAGCAGTGCAACAGTTGGTTGCTGAGCTTCTCTCACATCTACTTTTAGAAGAACACCTTCAGAGGGATCCAGTGACACAGCAAGTAATTGGACCTCTTGTGCGAGTTCTTGGTTCTGGCATACAAATATTGCAGCAGAGAGCTTTGAAGGCCCTTGTCAGTATTGCATTTGTATGGCCAAATGAAATTGCAAAAGAGGGAGGCGTTGTTGAAATTTCCAAAGTGATATTGCAAGCTGACCCTTGCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAATCCCTGTTGCTGTTTTGGTAAGGTTGCTTCAATCTGGATCAGAGAGCACAATTAGTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGAAACTAGTGCAGCTGCAGAGGCAATGGCTGAAAGTGGGGCTATAGAGGCTCTCTTGGAGCTCCTTAGATCTCATCAGTGTGAGGACACTGCTGCAAGACTCTTAGAAGTATTGCTTAACAATGTAAAGATTAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGACCCACAAACTCAAGCACAGCAAGCAAGGCTATTAGCGACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAGCTGATGCAGTCTCAGCTTGTCGCGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTCATTGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTAGTGGGGTTCAGGTTATGCTGGATCTGATTGGTTCAGGTGATCCTGAAACATCTGTTCAGGCAGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCGAGTGAAACAGTCAGAGCAATAACCGCTGCTATTGAAAAGGATTTATGGGCTACTGGAACTGTGAACGACGAGTATCTTAAAACCTTAAATTCTCTATTTAGTGTCTACCCAAAGCTGAGAGCAACTGAACCAGCAACACTCAGCATTCCACATCTGGTTACATCCTTAAAGACAGGTTCAGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCGTGCCCAGCAGAAGTTTCAAGAGCTCAGTCCATAGCAGCCGCCGACGCTATTCCTTTGTTACAGTACTTAATCCAATCTGGCCCACCTAGGTTTCAAGAGAAGGCAGAGTTTCTATTGCAGTGTTTACCAGGGACATTGGTGGTGATTATCAAGTGCGGTAATAATATGAAGCAGTCTGTTGGAAACCCGAGTGTTTACTGTAAGCTTACACTTGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGTCCCAACCCAGAGTGGGATGAGAGTTTCTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAACAAGAGTAAAATGGGGAAGAGTTCATTCGGGAAAGTGACAATCCAGATTGACCGGGTGGTGATGTTGGGGGCAGTATCCGGAGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGCCCCTCGAGAAATTTAGAAATAGAATTTCAATGGTCTAACAAGTGA 6468 0.4304 MAAAITWRFSGNNGTTLASNDLERNGNGKAQDSEAPTPHSVPKMGLRERSSSGMEDADGTLASIAQCIEKLRQSSSSMQEKEYSLKQLSELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSEEGQVAAAKTIFSVSQGDAKDHVGSKIFSTEGVVPVLWEQLQKGLKSGSVVDSLLTGALKNLYSSTERFWNSTIQAGGVDILLKLLTTGQSSTLANVCFLLACMMMEDAAFCSKVLAADATKQLLKLLGPVNDAPVRAEAAGALKSLSAQCQDARKEIANCNGIPALINATIAPSKEFMQGEYAQAIQENAMCALANISGGLSYVISSLGQSLESCSSPTQTADTLGALASALMIYDDKAESNRASDPLAVEQTLLEQFTPRSPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLSNSECSLWRALQSREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLREGSAANDAINTMIKLLSSTKEETQAKSASALSGIFETRKDLRESNIAVKTLRSAMKLLNIESGSILVESSRCLAAIFLSIKENREVAANASDALSSLVALASSSDLEVAELATCAVANLFLDSEIAEDAVAEEVILPATRVLREGTKSGKTHAAAAIARLLHSRQVDYAVNDCVNRAGTVLALVSFLGSVINEPVATAEALEALAILSRLKETTALSKPAWRILVEFPKSITPVVLSIADSTPVLQDKAIEILSRLCKDQPSVLGETVATASGCISSIAKRIINSTSTNMKVKIGGAAILICAAKENHQRLVEDLNISNLCANLVQSLVDMLISAQATLVNQDSVNKEVISICRYTKDANDCKSTNITTIISGADVALWLLSVLACHDEKSKIAIMEAGAIEILTDRIANFSSQYSQIDYKEDSSMWICAMLLAILFQDRDIIRAHATMISIPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGVAGGLISLLGCADVDIEDLLELSNEFSLVPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTDLARDCPSNKIVMVESGAIEALTKYLSLGPQDAIEEAATDLLGILFSSAEIRKHESAFGAVAQLVAVLRLGGRAARYSAAKALESLFLADNIRNAETARHAVQPLVEILNTGSEREQHAAIAALVKLLSENPSRALAVADVEMNAIDVLCRILSSDCSMDLKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAHHSVVRALDRLVGDEQLAELVAAHGAVIPLVGLLFGRNFVLHEAISRALVKLGKDRPACKMEMVKSGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFFLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPIEAVQQLVAELLSHLLLEEHLQRDPVTQQVIGPLVRVLGSGIQILQQRALKALVSIAFVWPNEIAKEGGVVEISKVILQADPCIPHALWESAASVLASILQFSSEFYLEIPVAVLVRLLQSGSESTISGALNALLVLESDDETSAAAEAMAESGAIEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTADAVSACRALVNVLEDQPTEEMKVIAICALQNLVMYSRSNKRAVAEASGVQVMLDLIGSGDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKTLNSLFSVYPKLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKCGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK* 2156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4957 2155 Gene3D - 1178 1299 IPR011989 -
Tpr2g4957 2155 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2155 - -
Tpr2g4957 2155 Pfam C2 domain 2034 2130 IPR000008 -
Tpr2g4957 2155 Gene3D C2 domain 2034 2155 IPR035892 -
Tpr2g4957 2155 Pfam Armadillo/beta-catenin-like repeat 105 135 IPR000225 GO:0005515
Tpr2g4957 2155 Pfam Armadillo/beta-catenin-like repeat 526 566 IPR000225 GO:0005515
Tpr2g4957 2155 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2155 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Tpr2g4957 2155 CDD C2 2036 2126 - -
Tpr2g4957 2155 Coils Coil 298 318 - -
Tpr2g4957 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1198 1242 IPR000225 GO:0005515
Tpr2g4957 2155 Gene3D - 645 820 IPR011989 -
Tpr2g4957 2155 ProSiteProfiles C2 domain profile. 2015 2132 IPR000008 -
Tpr2g4957 2155 SUPERFAMILY ARM repeat 1028 1155 IPR016024 -
Tpr2g4957 2155 SUPERFAMILY ARM repeat 466 641 IPR016024 -
Tpr2g4957 2155 SMART arm_5 526 566 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 482 524 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 312 361 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 137 177 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 731 772 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 1568 1609 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 1861 1901 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 1231 1272 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 94 136 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 1315 1354 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 1400 1440 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 1735 1773 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 269 310 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 568 608 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 1611 1650 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 818 860 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 1483 1523 IPR000225 GO:0005515
Tpr2g4957 2155 SMART arm_5 1441 1481 IPR000225 GO:0005515
Tpr2g4957 2155 Gene3D - 416 644 IPR011989 -
Tpr2g4957 2155 Gene3D - 1300 1529 IPR011989 -
Tpr2g4957 2155 MobiDBLite consensus disorder prediction 14 55 - -
Tpr2g4957 2155 SUPERFAMILY ARM repeat 1188 1569 IPR016024 -
Tpr2g4957 2155 Gene3D - 821 1171 IPR011989 -
Tpr2g4957 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515
Tpr2g4957 2155 Gene3D - 52 407 IPR011989 -
Tpr2g4957 2155 Gene3D - 1530 2033 IPR011989 -
Tpr2g4957 2155 SUPERFAMILY ARM repeat 67 387 IPR016024 -
Tpr2g4957 2155 MobiDBLite consensus disorder prediction 14 34 - -
Tpr2g4957 2155 SUPERFAMILY ARM repeat 615 968 IPR016024 -
Tpr2g4957 2155 SUPERFAMILY ARM repeat 1582 2032 IPR016024 -
Tpr2g4957 2155 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2034 2143 IPR035892 -
Tpr2g4957 2155 SMART C2_3c 2035 2131 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4957 Tpr-Chr2 55334155 55344717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4957 449 606 U-box Gene Family AT3G46510 31.658 2.81e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4957 - - gmx:100816765 3603.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4957 2 55334155 55344717 Tpr2g4957 2 55334155 55344717 ECH
Tpr3g0926 3 8573483 8583575 Tpr2g4957 2 55334155 55344717 PCT