Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4914 ATGGAACGCGAGGAGGGAAAACAATCTTCTCAAAAAAATCCTTACACAGAACTTGAGGAAGTTAGCTCCGATTTTATTCTAGCAATTGGTTTGCAAGAACAAGAGTTAGAGAGAACAACATTCACAAACCTAGCAACCATTGAAAGTGAAAGCGACGAAGATGTAACTGAGTCATCTTTTAGCAATGATGATATTGGTGATGCCGATTTTTCATTTAGTCAAGAGTTTGAAACCGATCTTCAATTTCTTGAAGGTGAAGGAAGTAATATTGATGACGACGACGATGACTACGATGAAATGGAAGAAGATGAAATTGATCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTAGGAGATTTTATAGGAGAAGAAAAAAGAGGATTATCACCTAATGAAATATCTTCTTGCTTATATCCTTATACTTGCAAAATTGCTGAAAGAAAAAGTGGAATTGATCGTTGTGTGATTTGTCAAATTGAATATGAAGATGGTGAAGCCTTAGTTGCACTTCATTGTGATCATCCTTATCATACAGATTGTATAAGCAAATGGCTTCAAATTAAGAGGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCAAACAAGGCTAAGAACACTTGA 627 0.3509 MEREEGKQSSQKNPYTELEEVSSDFILAIGLQEQELERTTFTNLATIESESDEDVTESSFSNDDIGDADFSFSQEFETDLQFLEGEGSNIDDDDDDYDEMEEDEIDPDELSYEELIELGDFIGEEKRGLSPNEISSCLYPYTCKIAERKSGIDRCVICQIEYEDGEALVALHCDHPYHTDCISKWLQIKRVCPICSNEVSTPNKAKNT* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4914 208 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Tpr2g4914 208 SUPERFAMILY RING/U-box 154 202 - -
Tpr2g4914 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 206 IPR013083 -
Tpr2g4914 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 204 IPR045191 GO:0061630
Tpr2g4914 208 Pfam Ring finger domain 154 195 IPR001841 -
Tpr2g4914 208 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 204 - -
Tpr2g4914 208 SMART ring_2 155 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4914 Tpr-Chr2 54919863 54920863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4914 102 199 C3H Transcription Factor Family AT3G63530 47.525 1.39e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4914 K19045 - gmx:100526881 300.441