Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4852 ATGGTGTTCAACGATAGGATGAAGATGGAAGGAAAATTTGAGGATGTTGCTGGGATATCCCCCGGTAGGGAGGTCGGTACAATTAAGGTGAGGGTGCTTCGTCTGTGGAAGGTGCCTGCTTTCATGAATCCGAATGAAACCAGTTCTCTTAAGATGGTTCTGGGTGATGAGAAGGGTGGAAAGATTCATGCTTTTGTTAGGAAGCAACTTATTGGTTTGTTTGATTCGAAGCTTGAAGAGGGTGGGGTATATGAGATTTCTGGGTTTTTTGTGCTTTCTGAAAATGGTGTGTATCGTACCACTCTTCATCCTTATAAGATTGGCTTCCAAAGTAGGACAAAGGTCAGGTCGTGTGAGAGTTCTGGTATATCTCAGTTTGGCTTAAGTTTCACTAATATAGGTGAAATTTCTTCTCATAGTCGTGATTATGATTTTCTCGTCGATGTGATTGGTGTAATGACTGGGATACATGCTGAACGTGAGTATATTAGGGATGGCAAGATCACTAAAATGGTTACTATTGAGTTAACTGATCACACTGGTAAATGTGATTGTGCTTTGTTCGGTGAATATGTGGATGAATTGAACAAGAAAATTGGCAAATTCAGTCCTGGTTTGCCTATTGTTGTTGTTCAGTATATGAAAGTGAAGATTTTCAGAGAAAAGGCTTCTATCCAGAATGTTATGAATGCTACAAGGTTGATGATCAATCCTGATATTCCTGAAGTTGAGTCTTTTAAAAATAGTATTGATGTCCATGGTATTGATTGTGATGCTGATGTTCCTTTGATTGGAGAACCCCCTAAGCCTCCTTTTGAGGAGGAATTTCTTCGTATGCATCCCAAGAAGACTATTGCTGAGCTAGGTGATGTGGTTGATGATGGTGTGTTTGTGGTGTGTGGTGAGGTTGTTGGTGTGGTTGATGGACATAATTGGTGGTATCCAGCATGTAAATGTCACAGGGCTGTTGTTGTTGATTCTGGGACATATTTTTGCAGTTCATGTGATAGGCATGTTTTTCATGTCATACCAAGGTTTAGGGTCAAGTTTGAGGTTGCTGATGGTGATTCTTCCTGTGTGTTTGTATTGTTTGATTCTGAGATGAGCTATATTGTTGAGAAATCTTGTGCGTTTTTTGTTGCTCAATCAAAGGGCAAAAATGTTGGACCACATCCCATGGAGTTTGACAGTTTGGTTGGGAAAAGGATGTTGTTTGTTGTTTCTAAGTCTGGTAAGCCATCTGCTGTGGATGATGGTTCATTCAGGGTAAAGAGAGTTTGTATGGATCCTGTTATTGTTGAAAAGTTCTTGGCTGATATTGGTTTCTCTACTCCAAAGAGGTTGTCTCCTATAATTGATCTTGAATCAGATGGTGTGAGTGATGATTGTCGCAGTGTTGAAGGTGCTGAAGATGTTGATCAGTTTCTCAAAGATCTTATTGTCAATCCACCTGATGCTTGTGAGGCTGATGATGATGACCCTGATGCTGCTTTTGTGGTGAAGAGGAATCTGTCTAAGGCATTTGATGGAGCTGCTAAGCCAAAACGTAGTATTCGTCTGAAAAAAGTGAAGATCAAGAAAGAATGA 1587 0.4026 MVFNDRMKMEGKFEDVAGISPGREVGTIKVRVLRLWKVPAFMNPNETSSLKMVLGDEKGGKIHAFVRKQLIGLFDSKLEEGGVYEISGFFVLSENGVYRTTLHPYKIGFQSRTKVRSCESSGISQFGLSFTNIGEISSHSRDYDFLVDVIGVMTGIHAEREYIRDGKITKMVTIELTDHTGKCDCALFGEYVDELNKKIGKFSPGLPIVVVQYMKVKIFREKASIQNVMNATRLMINPDIPEVESFKNSIDVHGIDCDADVPLIGEPPKPPFEEEFLRMHPKKTIAELGDVVDDGVFVVCGEVVGVVDGHNWWYPACKCHRAVVVDSGTYFCSSCDRHVFHVIPRFRVKFEVADGDSSCVFVLFDSEMSYIVEKSCAFFVAQSKGKNVGPHPMEFDSLVGKRMLFVVSKSGKPSAVDDGSFRVKRVCMDPVIVEKFLADIGFSTPKRLSPIIDLESDGVSDDCRSVEGAEDVDQFLKDLIVNPPDACEADDDDPDAAFVVKRNLSKAFDGAAKPKRSIRLKKVKIKKE* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4852 528 CDD RPA1_DBD_B_like 148 247 - -
Tpr2g4852 528 Gene3D - 12 118 IPR012340 -
Tpr2g4852 528 PANTHER REPLICATION FACTOR A 1, RFA1 28 377 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr2g4852 528 Pfam Replication factor-A C terminal domain 303 378 IPR013955 -
Tpr2g4852 528 CDD RPA1_DBD_A_like 27 115 - -
Tpr2g4852 528 SUPERFAMILY Nucleic acid-binding proteins 13 120 IPR012340 -
Tpr2g4852 528 SUPERFAMILY Nucleic acid-binding proteins 128 257 IPR012340 -
Tpr2g4852 528 Gene3D - 277 426 IPR012340 -
Tpr2g4852 528 Coils Coil 522 528 - -
Tpr2g4852 528 CDD RPA1_DBD_C 311 408 IPR013955 -
Tpr2g4852 528 Gene3D - 123 258 IPR012340 -
Tpr2g4852 528 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 377 - -
Tpr2g4852 528 Pfam Domain of unknown function DUF223 52 132 IPR003871 -
Tpr2g4852 528 SUPERFAMILY Nucleic acid-binding proteins 283 410 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4852 Tpr-Chr2 54132315 54135453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4852 6 372 Core DNA Replication Machinery Family AT5G08020 23.177 6.08e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4852 - - mtr:MTR_8g062030 444.891