Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4834 ATGAAGAGACTATCCACCTCAGATTCTTCAAATCCTCTCATCACTATCTCTCCATCAACAGAGGAGCAAAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGCTTGATGGATTTGAAGAAGAAGGATGTGGTGAAGAAACGGGCCATCACTCGGAGAAGAAACGACGATTACGAGTGGATCAAGTTAAGGCTTTAGAGAAAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGAAAAGAGAAGCTTGCTATAGAACTTGGGTTGCAGCCTAGACAAGTTGCTGTTTGGTTCCAAAACCGTCGTGCTAGATGGAAGACTAAACAGTTGGAAAGGGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAATATGATGCAATTGGTCAAGATAACAAAGCTCTTAACAAGGAGATTAAGGAATTGAAATCAAAGCTGGAAGAAGGAGAAAAAAGCTCAAGCAGTGTTTTGGTGAAGGAGGAGATAATGATGCTTGAATCCGACGAAGAGAAGCATAACCCATCATCCGAAACATCAATTCCTAGTTCAGAATCCAAGGATCACTTGAATTATGACTGCATAATCAACAACAATGATATTGGTATTGGAGAAGCTTCTTCACTCTTTCCGGTAGACTTGAAAGACGGTTCTTCTGACAGCGACTCTAGCGCAATTTCTTCATCCGGGGTTCTTCGAGGTCACCTTTTGTTGTCTCCTGACTCTTCCTCTATGAGTTGCTTCCAATACCCGAAATCCTATCAAGTGAAGATGGAAGAGCAGAATTTCTTAAGTGCAGATGAGGCATGCAATTTTTTCTCGGATGATCAAGCACCGACGCTACAATGGTACTGTCCTGATCAATGGAGTTAA 894 0.4094 MKRLSTSDSSNPLITISPSTEEQSPRNKHVYGMEFQSMMLDGFEEEGCGEETGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKYDAIGQDNKALNKEIKELKSKLEEGEKSSSSVLVKEEIMMLESDEEKHNPSSETSIPSSESKDHLNYDCIINNNDIGIGEASSLFPVDLKDGSSDSDSSAISSSGVLRGHLLLSPDSSSMSCFQYPKSYQVKMEEQNFLSADEACNFFSDDQAPTLQWYCPDQWS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4834 297 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Tpr2g4834 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 234 IPR045224 GO:0003700
Tpr2g4834 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 246 288 IPR045224 GO:0003700
Tpr2g4834 297 Coils Coil 112 160 - -
Tpr2g4834 297 Gene3D - 52 120 - -
Tpr2g4834 297 SMART HOX_1 56 117 IPR001356 GO:0003677
Tpr2g4834 297 MobiDBLite consensus disorder prediction 1 28 - -
Tpr2g4834 297 MobiDBLite consensus disorder prediction 1 26 - -
Tpr2g4834 297 SUPERFAMILY Homeodomain-like 47 115 IPR009057 -
Tpr2g4834 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 234 - -
Tpr2g4834 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 246 288 - -
Tpr2g4834 297 MobiDBLite consensus disorder prediction 174 193 - -
Tpr2g4834 297 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Tpr2g4834 297 CDD homeodomain 58 114 IPR001356 GO:0003677
Tpr2g4834 297 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Tpr2g4834 297 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Tpr2g4834 297 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Tpr2g4834 297 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4834 Tpr-Chr2 53868124 53870984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4834 1 297 Homeobox Transcription Factor Family AT4G40060 47.619 3.61e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g4834 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4834 K09338 - gmx:100777924 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4834 2 53868124 53870984 Tpr2g4834 2 53868124 53870984 ECH