Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4825 ATGGGTCTCTCAAACTTCCCCTATGCAGCAGAAGGAGTTGTACCTGTACTTGTGATGAACACAGTTCTATCTATGGTACTATTAAAAAACATGTTCAGATCCATGCTTCAAGTAGTTCGTTGCACATCATCAATCACTAATAATTCTCCAAATCTTGATGAACAAGAACAACAACAAGAGTATTACTCCCAAGAGAATAGTAATAATTCAAGGGAAAGGAGGGTGTCAATAACACATTACAAGTCATTGTGCTACAACAGGACAAGTCCTATGATGGTAGAGTGTTGTGTGTGTTTGTCTGGTTTTGAAGCAACTCAAGAGGTGAGTGAGTTGCCTTGCAAGCATTTCTTCCATAGAGGTTGCTTAGATAAATGGTTTGATAACAAACATAGTTCTTGTCCTTTATGTCGTTCTATGGAATAA 423 0.3783 MGLSNFPYAAEGVVPVLVMNTVLSMVLLKNMFRSMLQVVRCTSSITNNSPNLDEQEQQQEYYSQENSNNSRERRVSITHYKSLCYNRTSPMMVECCVCLSGFEATQEVSELPCKHFFHRGCLDKWFDNKHSSCPLCRSME* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4825 140 SUPERFAMILY RING/U-box 94 138 - -
Tpr2g4825 140 MobiDBLite consensus disorder prediction 49 72 - -
Tpr2g4825 140 CDD mRING-H2-C3H2C2D_ZSWM2 94 137 - -
Tpr2g4825 140 SMART ringv_2 94 137 IPR011016 GO:0008270
Tpr2g4825 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 140 IPR013083 -
Tpr2g4825 140 PANTHER - 1 139 IPR044249 -
Tpr2g4825 140 SMART ring_2 95 136 IPR001841 -
Tpr2g4825 140 MobiDBLite consensus disorder prediction 49 71 - -
Tpr2g4825 140 Pfam Ring finger domain 94 137 IPR001841 -
Tpr2g4825 140 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Tpr2g4825 140 PANTHER F21J9.24-RELATED 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4825 Tpr-Chr2 53785166 53785861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4825 1 138 C3H Transcription Factor Family AT2G04240 34.868 3.97e-21 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4825 K16285 - gmx:100811790 181.03