Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4805 ATGGATCAGATTAAGAAGAAATCAAAGCTTGGATCTACTACATTGGAGGTTGAAAAAAAGAAATCAAAACTTGGATCAACTACAATGGAGGTTGAAAAAAAGAATTTACCGCAAGGATCTGTTTCAATGGAGGTTAACAAAAAGAATTCACCTCAAGGTTCTGTTTCAATGGAGGTTAACAAAAAGAAGAAACTAACTGCTGAACCTATAGAACATCAAGAGATATCTCAAGAGACCCAAATGGATCGTGACACCAAGATATCTCAGGTGACTGAAATCAACGATGGCATAAAGGTTTTGGCAGAAAACCAAGAGTTTGTTCATAATGTACCTCAGAAATCTCAAGATACCCAAATGCTTCAAGACAATAAGGAAAAGAAGCCTATTGAGTATGATTATGATGCTGTTAAAGATGTTACCAAGAAGAAAGAAATATGGAGACTAGGGGTGATTTTGGATGACATGTGGATTGTGTCGAAAGGAGAATCTGAAGTGATAATGGAAATGTTGCTCAGGGATATAAAGGGATATACTATCCAAGCGACTGTGATGACTGATGATATTGAGAAGTGGAAAGAACAACTTGCACAAGGCCAGACGTATTCTATGCGTAATTTTAGGGTTGCAGATAATGATTCACAATATAAGATGACTCCTCACAAATTTCGATTAATATTTGTTGGTGCAACAAGAGTTACTGCAGTTGAAATTCCAGAAATACCAAAAACACATTTTTACTTCAAGGATTTTGAAGAGATCTCTAATGGGACTTTTCGCACTGATCTGTTAGTTGATGCTATAGGAGTTGTTAACTCTATTGGGAAGATTGTTACTGCAACTACAACAAGGAAAGCTAATGTCGCTTTTACCATCAAAGATCAGCGTGATAAGGAACTTGATTGTACTCTGTGGGATTTAGTATCTGACCAATTTATCAATGGTTACAACCAACGATCTAATAATGATCCATGTGTCATCATTATGAGACATGTTCGAGTCAGAGAAGCACAAGGATCATACCCCTTGCAATTAACAAATGTGTGGAATGGAACTAAGATTCTATTTGATACATCGATACCTGAAATAGAAAAATTTCGTGCCAGCTTGCCCAAGGAAACTGTTTATGCGTCGCAAAACAGGTCTTTTTCAACTTCTACACAATTATACACCCAAAGTTATGCTGGTACTCAATACAATACTGATGAAAACTTCATGAGAAATGCCCAAGTTCTTTCATTGGGAGCTATTAAAAAACTTAAAAAGGATGCAGTTTGTGTTACTGTAGTGAACACTTCACACATTAGGGTGTCAAATGGAGGTTGGTTTTTTTATGCTTGCAATGATGGTACAAATGACTGCTCCTTAAAATGTGAAGGATCTGAACTCCCCTTTGTATGCCGAAAGTCACACACCACAAATGATCCTAGAGTCAAGTACAAGTTGGATGTTGAAGTATACGATGGTGACGATACAGCCAAGTTTGTTTTTTGGGACAATACTCTTGATGAGATGGTTGGCCTAACTGCAAAGACTCTACTTGAACAAGAAAAGAAGAATGGTTACGGTGACCAGCAGGAATATCCTCGCCATTTTGATGCTATCATGGAACGGAAATTTGCAGTTAGAGTTAAGTGGCAAATTGGATGGGGTGGGATGGGATCTGTTGTCATGTGTAAGGATAGTCCAGATTTGATTGCCAAAATTGAGGAACAACTTCCTATTGCAGAGAGTACATTCAAAGACATTGAAACCATCAATATAATTGAGGAAGAACTTTGTGCAATATCTCAATCACCTACGATTCAGGCTTTTACAAAAGACGATATTGAAAAATTTGCTCACCTAGATGATGGAATTCTATCAACACCAAATGTTTCAGCTTCATCAGAGAATGATATCTCTCCTTCTTCTCAAAAGACTCCAGCCAAAAGGACTGCTGCAAAGGAACAACCAGTTGAATCTCTCAATCTTGATTGTCAGGCTTCATCAACAAGATCTGGCAAACTGATTAAAAAAGAGAAAATTTAA 2028 0.3728 MDQIKKKSKLGSTTLEVEKKKSKLGSTTMEVEKKNLPQGSVSMEVNKKNSPQGSVSMEVNKKKKLTAEPIEHQEISQETQMDRDTKISQVTEINDGIKVLAENQEFVHNVPQKSQDTQMLQDNKEKKPIEYDYDAVKDVTKKKEIWRLGVILDDMWIVSKGESEVIMEMLLRDIKGYTIQATVMTDDIEKWKEQLAQGQTYSMRNFRVADNDSQYKMTPHKFRLIFVGATRVTAVEIPEIPKTHFYFKDFEEISNGTFRTDLLVDAIGVVNSIGKIVTATTTRKANVAFTIKDQRDKELDCTLWDLVSDQFINGYNQRSNNDPCVIIMRHVRVREAQGSYPLQLTNVWNGTKILFDTSIPEIEKFRASLPKETVYASQNRSFSTSTQLYTQSYAGTQYNTDENFMRNAQVLSLGAIKKLKKDAVCVTVVNTSHIRVSNGGWFFYACNDGTNDCSLKCEGSELPFVCRKSHTTNDPRVKYKLDVEVYDGDDTAKFVFWDNTLDEMVGLTAKTLLEQEKKNGYGDQQEYPRHFDAIMERKFAVRVKWQIGWGGMGSVVMCKDSPDLIAKIEEQLPIAESTFKDIETINIIEEELCAISQSPTIQAFTKDDIEKFAHLDDGILSTPNVSASSENDISPSSQKTPAKRTAAKEQPVESLNLDCQASSTRSGKLIKKEKI* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4805 675 MobiDBLite consensus disorder prediction 624 658 - -
Tpr2g4805 675 PANTHER NUCLEIC ACID-BINDING, OB-FOLD PROTEIN-RELATED 150 513 - -
Tpr2g4805 675 Gene3D - 390 549 IPR012340 -
Tpr2g4805 675 Pfam Domain of unknown function DUF223 168 263 IPR003871 -
Tpr2g4805 675 CDD RPA1_DBD_A_like 147 232 - -
Tpr2g4805 675 MobiDBLite consensus disorder prediction 1 28 - -
Tpr2g4805 675 SUPERFAMILY Nucleic acid-binding proteins 245 376 IPR012340 -
Tpr2g4805 675 SUPERFAMILY Nucleic acid-binding proteins 420 547 IPR012340 -
Tpr2g4805 675 PANTHER REPLICATION FACTOR A 1, RFA1 150 513 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr2g4805 675 MobiDBLite consensus disorder prediction 624 644 - -
Tpr2g4805 675 MobiDBLite consensus disorder prediction 29 59 - -
Tpr2g4805 675 CDD RPA1_DBD_B_like 265 370 - -
Tpr2g4805 675 Gene3D - 239 378 IPR012340 -
Tpr2g4805 675 Gene3D - 132 236 IPR012340 -
Tpr2g4805 675 SUPERFAMILY Nucleic acid-binding proteins 131 235 IPR012340 -
Tpr2g4805 675 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4805 Tpr-Chr2 53550579 53555481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4805 160 512 Core DNA Replication Machinery Family AT5G45400 20.708 2.16e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4805 - - lang:109343677 274.248