Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4796 ATGTCTAATCCAAACCCAAATTCCCATAACCCGACCCAGATACTTCACCCGCATCAAGATCCAAATAGCAACACCGCCGACCCTCAAGTTCCGCTTCGGAACCTATCCTTGGTTCGAACCAGAATCGATTCTCTACGAACCTTCCTATCTCAATCCATCAACACAAACACTCCTATCACCAACGATCAAATAACCGTCGTCTCCAACCAGATCGTCTCCGCCATCCACCACACCATAGTCAACGCCGCCGCCCTCGTTTCTTACTCTCAAAATCTCACCGTTCCCGGATCCTCAATCTTCCCACCGCCCTCCTCCAAGCTCGATTCAAAGATCGAACCAGCTAAAGATGAAGTTGACGACTGCGACGACTACCTCATCGACGACGATTGCGAAATCGTGGAACTCGACGCTGTCGAATTACTAGCTGAACATCTCCATTTCTGCGAGATTTGCGGGAAAGGATTCAAACGCGATGCGAATCTCCGGATGCATATGAGAGCACACGGGAACAAATTCAAGACGCCGGAAGCATTAGCGAAGCCTTTAAACGACGGAACACAGGGTCGTCGTCGTTCGACGCTATTCTCTTGTCCGTTTGAAGGATGTAACAGAAACAAGAAGCATAAGAAATTCAAGGCTTTAAAATCGGTTATTTGTGTTAAGAATCATTTCAAGAGAAGTCATTGTCCGAAAATGTATTCGTGTAACCGTTGTAATAAGAAGAAATATTCAGTGGTTTCGGATTTGAAGAGTCATATGAAACAGTGTGGTGATGAGTGTAAGTGGAAATGTTGTTGTGGGACAACGTTTTCTAGGAAGGATAAGTTGTTTGGACATGTTGCTTTGTTTGAGGGTCATATGCCTGCTGTTGTTTTGGAAGAATGTGAGGAGAAAGGGAAACAAGTTATGGTAGTGGAAGAGATTGAAGATTCTATTGTGGAGAAAGAGAAAAGTGATTTGGGTATGGATGAAGAATTTTTTGATGATTTTGGGTGTATTGATAACTATTGTTTGGAGGAAGTTTTGGGATTTCATGGTAGCTAG 1044 0.4397 MSNPNPNSHNPTQILHPHQDPNSNTADPQVPLRNLSLVRTRIDSLRTFLSQSINTNTPITNDQITVVSNQIVSAIHHTIVNAAALVSYSQNLTVPGSSIFPPPSSKLDSKIEPAKDEVDDCDDYLIDDDCEIVELDAVELLAEHLHFCEICGKGFKRDANLRMHMRAHGNKFKTPEALAKPLNDGTQGRRRSTLFSCPFEGCNRNKKHKKFKALKSVICVKNHFKRSHCPKMYSCNRCNKKKYSVVSDLKSHMKQCGDECKWKCCCGTTFSRKDKLFGHVALFEGHMPAVVLEECEEKGKQVMVVEEIEDSIVEKEKSDLGMDEEFFDDFGCIDNYCLEEVLGFHGS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4796 347 Gene3D Classic Zinc Finger 146 169 - -
Tpr2g4796 347 SMART c2h2final6 233 254 IPR013087 -
Tpr2g4796 347 SMART c2h2final6 146 168 IPR013087 -
Tpr2g4796 347 SMART c2h2final6 195 228 IPR013087 -
Tpr2g4796 347 SUPERFAMILY beta-beta-alpha zinc fingers 142 169 IPR036236 -
Tpr2g4796 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Tpr2g4796 347 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 2 343 - -
Tpr2g4796 347 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 2 343 IPR044300 GO:0010044|GO:0010447
Tpr2g4796 347 MobiDBLite consensus disorder prediction 1 29 - -
Tpr2g4796 347 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4796 Tpr-Chr2 53412215 53413751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4796 115 294 C2H2 Transcription Factor Family AT1G34370 58.242 4.03e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g4796 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4796 - - cam:101491258 495.352