Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4771 ATGAAGAAAACCTTTCCCCCAAATTACAACCCTCATTTCCACCGTCAACCACCGCACTGTCCCGTTTACCGATACCGGAAGCCTGGATTTCATTCCAACCACCGTGTCGATCGTCCTCCAGAACGAAATTCCCCTCACCGTCCTCCCAATTTCATTCTCATGCTTCATCTCGGCCGTCGTGCTCTTCATCGGGATGATGTCGAGTGTCTCATCGGTAAATGTAAACCTAATCCTGATAATTTCCTTTTTTACCCCTGCGATGGTGTTGCTGCTTCACTCAATTTCATTCAGTGGACGGATGCTCGTGATGCTGTAGTTTGGTTTTGGGAATCGCGTCTTTCTGAAGGTCATGATTTTACGCCGGAGTTGATTTCGAATGTTATGGTGCCTTCTGATAGGGTTGAGCTTGAAGGTAGTCTTAGGAGGGTTTTTGTTAGTCATGTGAAGGAGTTGATGGAAGGGAAGGAAGTGAAGAGATTGGTGGAGGAGTGGGATCGATTGGCGAAGGAGATTGGGAGTGTTGTGAGTTTGTTGGGTAAGCCTTTTCCAATTAGGGTTCAGCAACAGAATATTCAGAGAAAGAAAGGGCTTGATGATGAGAAGAGTTTGGTTGAAAGGAGATTGAAGGAGTTTGAGTTTGCAATGGAGTGCATTTTGCAGCATCTTGGAGAGAATAATCATGCGGACTGTGGTGGAGATTTTGTTCCTGTGTTTAAGTTTGGTGAAAGTTTTGATTGGGGGAAGATTCACAGTCTCATTGTTAGGGAACGTCGCAGACTCGAAGACGGATTGCCCATTTATGCTTACCGGAGGGAAATTCTTCAGCAAATACATCATCAACAGATAACAGTGTTGATTGGAGAGACCGGTTCTGGGAAGAGCACTCAGATAGTGCAGTTTCTTGCGGATTCCGGCATTGGGGCTGATGAGTCAATTGTGTGCACTCAGCCTCGCAAGATTGCTGCCAAGTCATTGGCGCAAAGGGTCCAGGAAGAAAGTAGTGGATGTTATGAAGAAAGTTCAATCCAGTGTTATTCTACATTTTCATCCGGCGACATGTTTGATTCCAGGATAGCATTCATGACAGATCACTGTTTATTGCAGCAGTACATGAATGATAGGAATTTGTCTGGGGTCTCGTGTATCATAGTTGACGAGGCTCATGAAAGGAGCTTAAATACTGATCTACTGTTGGCGTTGATAAAGAATTTGCTTTGTAAGAGGGTTGAAATTCGACTTATCATAATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGATTATTTCTATGGTTGTGGAATTTTTCACGTGGTTGGGAGAAACTTCCCTGTGGAGATGAGATATGTTCCTGCTGACTATGGAGAACATTCTGGTTCTGCTGTTGTGGCGTCATATGTTTTTGATGTTGTCAAAATGGCAACCGAGATTCACAAAACAGAGGAAGAAGGAACTATTCTCGCCTTTCTGACCTCACAGTTTGACGTAGAATGGGCGTGTGAAAATTTTAAAGCCCCATCTGCAGTTGCTCTTCCCTTGCATGGGAAGCTTTCGTCTGAAGAGCAATTTCATGTTTTCCAGAACTATGCTGGAAAAAGGAAAGTGATATTTTCAACGAATCTTGCAGAGACATCAATTACAATTCCTGGTGTTAAGTATGTGATCGATTCTGGGTTGGTTAAAGATTGCCGATTTGATCCTTGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAACCAAAGGGCAGGTCGTGCTGGGAGGACTGAGCCTGGCAGGTGCTATAGGATGTACTCAGAAGCTGATTATCAGTCCATGGAGCTAAATCAAGAACCTGAGATTCGAAGGGTTCATCTTGGTGTAGCAGTTTTGAAGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGCCCTAGCTCCATTGAGATGGCGATTAGGAATCTAATTCAATTAGGATTTATTAAAGTGAACAATAATGTTCATGAACTAACTTATGAAGGTAGGTACTTGGCAAGAATGGGGATTGAACCTAGGCATGGTAAACTTATTCTTGGCTGTTTCAAACTTGCTTTGGGTAGAGAGGGCATTGTCCTTGCAGCCATGATGCCCAATGCTAGTAACATATTTTGCAGATTTGGTAATGAAGATGATAAACAAAGATCTGATTGTCTCAAAGTGCAATTTTGCCATCCCGATGGAGACCTTTTTACTCTTCTCTCTGTGTACAAGGAATGGGAAGCTCTGCCACAAGATAGGAGGAATAAATGGTGTTGGGAAAACAGCATCAATGCAAAATGCATGAGGAGATGCCATGACACAGTTTTGGAGTTAGAATCTTTCCTCGAGCGTGAACATGGCTTTGTTGTTCCAAGTTACTGGCGTTGGGACCCCCATACGCCTTCTGTTCATGATAAGAATATGAAAAAGGTTATACTGTCCTCACTTGCTGAAAATGTAGCCATGTTCTCTGGACGCTATCAGCTTGGTTATGAAGTAGCACAAACAGGACAGCATGTTCACCTGCATCCATCTTCTTCCTTGCTCGTATTTGCTCAGAGGCCTAGTTGGGTAGTTTTTGGTGAGCTTCTCTCGGTTTCTAATGAATATTTGGTCTGTGTGAGTGCTGTTGACTTTGAATCATTAAACAGCCTTCAACCTTCTCCCTTGTTTGATGTATCCAAGATGGAAGAGCGGAAGTTGCAGATGAAGACACTGACTGGTTTTGGCACTGTTCTTCTAAAGAGATTTTGTGGGAAACTCAACAGTAATTTGCTTGGTCTTGTTTCACGTATCAGGAAAGCTTGTATGGATGAAAGAATCTATGTTGAAGTGAATGTTGATGAGAATCTCATCAAGTTATATGCTGCTTCACATGATATGGATACAGCTAGTATGTTTGTGAATGATGTTTTAGAAGATGAGAAAAAGAGGTTACGCGTTGAATGCACGGAAAGATATTTGTATCATGGGTCTGGTTCCTCATCACCCGTGGCCTTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAACATTCTTTGAGTGTTGAAGTGTGTCACCCAAACATAAATGCAATTGATGATAAGGAGCTCCTGATGTTTTTTGAGAAGAATACCTCAGGTTGTATATGTTCCGTGTACAAGTTCCAAGGCATGGTAAAGGATGCTGATGATAGAGAAAAGTGGGGCAAGATAACATTTTTGTCCCCTGATGCTGCCAAAAGGGCTGTTGAGCTGAATGGAGAAGAGTTTTGTGGCTCGTCCTTGAAAATACTTCCTTCACAATCAGCTATGGGAGGGGATAAAACATTTTCATTTCCTGAAGTTAAAGCAAAAATATTTTGGCCTCGTAGACCTAGCAAGGGATTTGGCATACTTAAATGTGATAAAAATGATGTCAATTTCATCTTGAGAGATTTTTTTAACCTTGCAATCGGAGGGAGGTATGTTCGCTGTGTACCCAGTAATAAGTCTATGGATTGTATTGTGATAAGTGGGCTTGACAGAGAGCTTTCAGAAACTGAAATTTTAGATGTACTGAGAACTGCTACAAGTAGAAGGATTCTGGACTTTTTCGTGGTGAGGGGAGATGCTGTTGGAGATCCACCATGCGGTGCCTGCGAAGAGGCACTCTATAAAGAAATTTCCCCCTTAATGCCCAAAACAAATCCTCATACTAGTTCTTGCCGCGTTCAGGTATTTCCAGCTGAGCCAAAGGATTCTTTCAAGAGAGCTTTAATTAATTTTGATGGAAGGTTGCACTTAGAGGCAGCAAAAGCTTTGGAGAAAATTGAAGGAAAGGTGTTGCCCGGATGTCTTTCATGGCAGAAGATAAAGTGTGAGCAGTTGTTTCACAGCTCCTTGATATTTCCTGCTCCAGTCTATCATGTGATTAGGGAACAACTGGAAAAAATACTTGCAACCTTCAACAATTTAAACGGTCTTGAGTGGAACTTAAACAGGACTGCTACTGGCTCCCACCGATTGAAGATAACAGCCAATGCCACAAGGACAGTGGCAGAAGTTAGGAGACGTCTGGAAGAACTGTCTCGAGGGAAAATCATTGAGCACGACAGCCTCACCCCTGCAGCTCTACAGCTCCTGTTGTCCAGAGATGGCATTAGTCTTAAATGCTCAATACAGCAAGAGACTACAACTTATATTATTTTTGACAGGCACAACCTGAATTTACGGATTTTTGGTTCACCAGATAAGATTGCTTTGGCTCAGCAGAAATTAATTCAATCTCTATTGTCCATCCATGAAAAAAAGCAGTTAGTAATCCCTCTGAGAGGGAGGAACCTACCTTCTGACTTAATGAAGCAAGTGGTCAAGAATTTTGGGCCAGATCTTCATGGACTAAAAGAGAAGGTTCCTGGAGCTTATCTTAAACTTAACACACGGCAACAGTCGATCTTTCTTCATGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAATAGCTCTTGAGATTGCCCGTTCAGGCCATCATTTAGTTGAGAGACTTGACACAGGACCCAGTTGCCCAATTTGCTTGTGTGATGTTGAGAATGGATATCAACTTGAAGGCTGTGGTCATTTGTTCTGCCGGCTGTGTCTGATGGAGCAGTGTGAATCTGCTATAAAAAACCAAGGCAGTTTCCCAATATGTTGTGCTCACAAGGGCTGTGGAGATCCTATTCTGCTTACAGATTTCAGAACTCTCCTGTCAAATGATAAGTTGGATGAACTTTTCAGGGCATCTTTGGGAGCTTTTGTAGCTTCAAGTTCGGGAAGTTATAGGTTTTGCCCCTCGCCTGACTGCCCCTCAATTTATCGAGTTGCAGATCCCGACACAGCTAGTGAGCCATTTATTTGCGGGGCATGTTATTCAGAGACTTGTACCAAGTGTCACATAGAGTATCATCCATACCTTTCGTGTGAGAGATACCGAGAGCTCAAGGATGACCCAGACTCATCTCTGAAGGAGTGGTGTAAAGGGAAAGAACAAGTCAAGAGCTGTTTTGCTTGTGGGCAAATAATTGAGAAGATTGATGGGTGCAATCACGTTGAGTGCAAGTGCGGAAAGCATGTCTGCTGGGTTTGCTTGGAAATCTTCACAAAAAGTGATGAATGCTATGATCATTTGAGAACTATACACATGACCATATAA 5190 0.4277 MKKTFPPNYNPHFHRQPPHCPVYRYRKPGFHSNHRVDRPPERNSPHRPPNFILMLHLGRRALHRDDVECLIGKCKPNPDNFLFYPCDGVAASLNFIQWTDARDAVVWFWESRLSEGHDFTPELISNVMVPSDRVELEGSLRRVFVSHVKELMEGKEVKRLVEEWDRLAKEIGSVVSLLGKPFPIRVQQQNIQRKKGLDDEKSLVERRLKEFEFAMECILQHLGENNHADCGGDFVPVFKFGESFDWGKIHSLIVRERRRLEDGLPIYAYRREILQQIHHQQITVLIGETGSGKSTQIVQFLADSGIGADESIVCTQPRKIAAKSLAQRVQEESSGCYEESSIQCYSTFSSGDMFDSRIAFMTDHCLLQQYMNDRNLSGVSCIIVDEAHERSLNTDLLLALIKNLLCKRVEIRLIIMSATADAKQLSDYFYGCGIFHVVGRNFPVEMRYVPADYGEHSGSAVVASYVFDVVKMATEIHKTEEEGTILAFLTSQFDVEWACENFKAPSAVALPLHGKLSSEEQFHVFQNYAGKRKVIFSTNLAETSITIPGVKYVIDSGLVKDCRFDPCSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRMYSEADYQSMELNQEPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSPSSIEMAIRNLIQLGFIKVNNNVHELTYEGRYLARMGIEPRHGKLILGCFKLALGREGIVLAAMMPNASNIFCRFGNEDDKQRSDCLKVQFCHPDGDLFTLLSVYKEWEALPQDRRNKWCWENSINAKCMRRCHDTVLELESFLEREHGFVVPSYWRWDPHTPSVHDKNMKKVILSSLAENVAMFSGRYQLGYEVAQTGQHVHLHPSSSLLVFAQRPSWVVFGELLSVSNEYLVCVSAVDFESLNSLQPSPLFDVSKMEERKLQMKTLTGFGTVLLKRFCGKLNSNLLGLVSRIRKACMDERIYVEVNVDENLIKLYAASHDMDTASMFVNDVLEDEKKRLRVECTERYLYHGSGSSSPVALFGSGAEIKHLELEKHSLSVEVCHPNINAIDDKELLMFFEKNTSGCICSVYKFQGMVKDADDREKWGKITFLSPDAAKRAVELNGEEFCGSSLKILPSQSAMGGDKTFSFPEVKAKIFWPRRPSKGFGILKCDKNDVNFILRDFFNLAIGGRYVRCVPSNKSMDCIVISGLDRELSETEILDVLRTATSRRILDFFVVRGDAVGDPPCGACEEALYKEISPLMPKTNPHTSSCRVQVFPAEPKDSFKRALINFDGRLHLEAAKALEKIEGKVLPGCLSWQKIKCEQLFHSSLIFPAPVYHVIREQLEKILATFNNLNGLEWNLNRTATGSHRLKITANATRTVAEVRRRLEELSRGKIIEHDSLTPAALQLLLSRDGISLKCSIQQETTTYIIFDRHNLNLRIFGSPDKIALAQQKLIQSLLSIHEKKQLVIPLRGRNLPSDLMKQVVKNFGPDLHGLKEKVPGAYLKLNTRQQSIFLHGNKELKPRVEEIALEIARSGHHLVERLDTGPSCPICLCDVENGYQLEGCGHLFCRLCLMEQCESAIKNQGSFPICCAHKGCGDPILLTDFRTLLSNDKLDELFRASLGAFVASSSGSYRFCPSPDCPSIYRVADPDTASEPFICGACYSETCTKCHIEYHPYLSCERYRELKDDPDSSLKEWCKGKEQVKSCFACGQIIEKIDGCNHVECKCGKHVCWVCLEIFTKSDECYDHLRTIHMTI* 1730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4771 1729 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 380 389 IPR002464 -
Tpr2g4771 1729 Gene3D - 441 613 IPR027417 -
Tpr2g4771 1729 CDD DEXHc_RHA-like 281 437 - -
Tpr2g4771 1729 Pfam Helicase associated domain (HA2) 655 749 IPR007502 GO:0004386
Tpr2g4771 1729 Pfam Helicase conserved C-terminal domain 475 593 IPR001650 -
Tpr2g4771 1729 Pfam IBR domain, a half RING-finger domain 1597 1653 IPR002867 -
Tpr2g4771 1729 SMART ibrneu5 1588 1653 IPR002867 -
Tpr2g4771 1729 SMART ibrneu5 1654 1718 IPR002867 -
Tpr2g4771 1729 SMART ultradead3 262 447 IPR014001 -
Tpr2g4771 1729 ProSiteProfiles Zinc finger RING-type profile. 1521 1563 IPR001841 -
Tpr2g4771 1729 CDD RRM_SF 1039 1104 - -
Tpr2g4771 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1518 1597 IPR013083 -
Tpr2g4771 1729 SMART ha2_5 654 750 IPR007502 GO:0004386
Tpr2g4771 1729 Gene3D - 1649 1727 - -
Tpr2g4771 1729 ProSiteProfiles TRIAD supradomain profile. 1517 1725 IPR044066 -
Tpr2g4771 1729 SUPERFAMILY RNA-binding domain, RBD 1074 1195 IPR035979 GO:0003676
Tpr2g4771 1729 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 819 895 IPR011709 -
Tpr2g4771 1729 SUPERFAMILY RING/U-box 1520 1588 - -
Tpr2g4771 1729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 772 IPR027417 -
Tpr2g4771 1729 CDD SF2_C_RHA 442 602 - -
Tpr2g4771 1729 ProSitePatterns Zinc finger C2H2 type domain signature. 1705 1726 IPR013087 -
Tpr2g4771 1729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 438 IPR014001 -
Tpr2g4771 1729 SUPERFAMILY RING/U-box 1675 1723 - -
Tpr2g4771 1729 Pfam DEAD/DEAH box helicase 270 425 IPR011545 GO:0003676|GO:0005524
Tpr2g4771 1729 ProSitePatterns Zinc finger RING-type signature. 1537 1546 IPR017907 -
Tpr2g4771 1729 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 89 1482 - -
Tpr2g4771 1729 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1555 1645 - -
Tpr2g4771 1729 PANTHER ATP-DEPENDENT RNA HELICASE 1555 1645 - -
Tpr2g4771 1729 PANTHER ATP-DEPENDENT RNA HELICASE 89 1482 - -
Tpr2g4771 1729 SUPERFAMILY RING/U-box 1603 1658 - -
Tpr2g4771 1729 Gene3D - 616 659 IPR042035 -
Tpr2g4771 1729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 634 IPR001650 -
Tpr2g4771 1729 SMART helicmild6 496 594 IPR001650 -
Tpr2g4771 1729 Gene3D - 250 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4771 Tpr-Chr2 53142040 53148763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4771 1536 1714 C3H Transcription Factor Family AT2G31770 25.000 3.01e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4771 K12818 - gmx:100810008 2623.19