Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4763 ATGGGTCTCTCAAACTTCCCCTATGCAGCAGAAGGAGTTGTACCTGTACTTGTGATGAACACAGTTCTATCCATGGTACTATTAAAAAACATGTTCAGATCCATGCTTCAAGTAGTTCGTTGCACATCATCAATCACTAATAATTCTCCAAATCTTGATGAACAAGAACAACAAGAGTATTACTCCCAAGAGAATAGTAATAATTCAAGGGAAAGGAGGGTGTCAATAACACATTACAAGTCATTGTGCTACAACAGGACAAGTCCTATGATGGTAGAGTGTTGTGTGTGTTTATCTGGTTTTGAAGCAACTCAAGAGGTGAGTGAGTTGCCTTGCAAGCATTTCTTCCATAGAGGTTGCTTAGATAAATGGTTTGATAACAAACATAGTTCTTGTCCTTTATGTCGTTCTATGGAATAA 420 0.3786 MGLSNFPYAAEGVVPVLVMNTVLSMVLLKNMFRSMLQVVRCTSSITNNSPNLDEQEQQEYYSQENSNNSRERRVSITHYKSLCYNRTSPMMVECCVCLSGFEATQEVSELPCKHFFHRGCLDKWFDNKHSSCPLCRSME* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4763 139 PANTHER - 1 138 IPR044249 -
Tpr2g4763 139 MobiDBLite consensus disorder prediction 49 69 - -
Tpr2g4763 139 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Tpr2g4763 139 SMART ring_2 94 135 IPR001841 -
Tpr2g4763 139 SMART ringv_2 93 136 IPR011016 GO:0008270
Tpr2g4763 139 SUPERFAMILY RING/U-box 93 137 - -
Tpr2g4763 139 CDD mRING-H2-C3H2C2D_ZSWM2 93 136 - -
Tpr2g4763 139 Pfam Ring finger domain 93 136 IPR001841 -
Tpr2g4763 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 139 IPR013083 -
Tpr2g4763 139 PANTHER F21J9.24-RELATED 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4763 Tpr-Chr2 53050394 53051099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4763 1 137 C3H Transcription Factor Family AT2G04240 34.211 2.65e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4763 K16285 - gmx:100811790 181.415