Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4745 ATGGGAGAAACCGGTAACATTGCAACGTTAAACCCAACGGCTCAAGAATTTAACCCAACAAACAACATTCCCCTAACAATCGCCGTCGGCGTTCCCTATCCCTACCCACCTTACGCCGTCACACCTCCGCCGCATCTCTCACCTATACCAACCCGTTCAATCCTCCTAAGTCCAGTCCCTCCTACCCCTGAATCCAACCTCCGAAAAGATCTCGCAGCCTTCGGTGAAGTCAGAGCCGTCAATACCGATTCCTTCCGTCACGGAATCGTAACGGCTCACTTCTATGACCTAAGACACGCCGAAACGGCGTTTACTGCTATTCGTACTCATCATGTTCACTGTGTCTCGTTCTTTAACCCGCTTTCTCATCCGCAATTTTACTCTGCTCCTCCGCCGCCGCCGGGTCTCGTCGCCGGCGTTCCTCTTTGGGCTCACTATGTTTTCTCCGATACTGAAAATCAAGGAACCCTAGTCCTATTCAACGTTGACGACAACGTTTCCGCTGATCATCTCCGACGAGTTTTCGAGCCTTTTGGAGCTGTAAAGGAAGTGAGGAACACTGCAGGGAAGAAAAAGAATCAAAGATTTGTGGAATTTTTTGACATAAGAGATGCAGCAAAAGCTATGAATGAAATGAATGGAAAAGAAATTGATGGAAAAAATGTTGTTATTGAGTTTAGTAGACCAAAATTTTTCCATCCAAATAATCCTAATTTATATGTTTCCAATAAGCCATTTCATTTAAACTTTAATCAACCACCACCTCCTCCGCCACGGCATTGTTTCGGTCCTACACCACAATTATCTCCAAAAAGTTTCACATTGAGTCCTAATAGAATTGGTGGTGATGAACATTATGGTGCTAAGAGGAACTTTGTTAGGAGTGAAAGTAGAGAGAGCTTTGGAGAAAGAAGTTGGGTTTGGAAAGGGAAGCAACAAGTAAGGAAGCATGAAGCTCGTTTTTTTATCAAAGAAGATGCCATTGTTGAATCTGATTCTAGAACAACTCTCATGATCAAAAACATACCCAACAAGTACAGTCAGAAGCTACTGTTGAATATGTTGGATAACCACTGCAAACACTGCAATGACCAGATAGGCGACGGCGATGATCAGCCTCTATCCTCCTATGACTTTGTCTACCTTCCTATCGATTTCAAGAACAAGTGCAACGTGGGATATGGGTTTGTGAATATGACATCTCCAGAGGCAACGCTAAGACTCTACAAAGCCTTCCACCGCCAAAATTGGGAGGTCTTTAACTCAAGAAAAATTTGTCAACTCACCTATGCCAGAATTCAGGGTTTGGAAGCAATGAAAGAGCATTTTAAGAACTCAAAATTCCCATGCGAAATGGAGCATTACTTACCAGTGGTATTTTCACCACCTAGAGATGGTAAAAATTTAACAGACCCAATTCCAGTAGTTGGGAACATGGTAAGAGTAGGTGGTGCTTCTCCTCCTGTAGATGATGAGATAGAGGAAGGTCGATGTGCTTGTGATGACGGTGTCTGCTACAAAAATGGCAGCATAGGTTATGATGATGATGATGATAAAACAGATGTGAAGTGA 1572 0.4338 MGETGNIATLNPTAQEFNPTNNIPLTIAVGVPYPYPPYAVTPPPHLSPIPTRSILLSPVPPTPESNLRKDLAAFGEVRAVNTDSFRHGIVTAHFYDLRHAETAFTAIRTHHVHCVSFFNPLSHPQFYSAPPPPPGLVAGVPLWAHYVFSDTENQGTLVLFNVDDNVSADHLRRVFEPFGAVKEVRNTAGKKKNQRFVEFFDIRDAAKAMNEMNGKEIDGKNVVIEFSRPKFFHPNNPNLYVSNKPFHLNFNQPPPPPPRHCFGPTPQLSPKSFTLSPNRIGGDEHYGAKRNFVRSESRESFGERSWVWKGKQQVRKHEARFFIKEDAIVESDSRTTLMIKNIPNKYSQKLLLNMLDNHCKHCNDQIGDGDDQPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRLYKAFHRQNWEVFNSRKICQLTYARIQGLEAMKEHFKNSKFPCEMEHYLPVVFSPPRDGKNLTDPIPVVGNMVRVGGASPPVDDEIEEGRCACDDGVCYKNGSIGYDDDDDKTDVK* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4745 523 SMART rrm1_1 156 225 IPR000504 GO:0003723
Tpr2g4745 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 222 IPR000504 GO:0003723
Tpr2g4745 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 229 IPR000504 GO:0003723
Tpr2g4745 523 Pfam RNA recognition motif 2 334 444 IPR007201 -
Tpr2g4745 523 Gene3D - 148 233 IPR012677 -
Tpr2g4745 523 PANTHER RNA BINDING PROTEIN 31 500 - -
Tpr2g4745 523 SUPERFAMILY RNA-binding domain, RBD 156 414 IPR035979 GO:0003676
Tpr2g4745 523 CDD RRM3_EAR1_like 334 435 IPR034458 -
Tpr2g4745 523 PANTHER TERMINAL EAR1-LIKE 1 31 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4745 Tpr-Chr2 52879483 52884135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4745 157 270 Eukaryotic Initiation Factors Gene Family AT2G23350 29.787 2.42e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4745 - - aprc:113851312 575.474