Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4729 ATGGATTTTCAAGATTTCTTCTTAGCAGTAACAATCACCTTAGGCTTCATCAAAATATGCAAATCTCTATTCCATTTTCTCAACTGGATATGGATCATGTTCTTAAGACCAACAAAACAGCTCAAAAAATATGGTTCATGGGCTATAATCACTGGCTCCACTGATGGAATAGGCAAAGCTATGGCTTTTGAGTTTGCATCTAAGGGACTCAACATACTCTTAGTTGGTAGAAACCCTCTTAAACTTGAGACAACATCAAAACAGATAATAGATAAACATGGTGGAAATGTTGAGGTAAAAAGTGTTGTTATAGACATGCAAAATATCAGTGGAAAAGAAATAATGAAAAGGGTGGAAGAAGCAATAGATGGTTTAGATGTTGGAATTTTAGTTAATGGTGCTGGTGTAGCTTATCCTTATGCTAGATATTTTCATGAGGTTGATTTGGATTTGATGGATTCTATTATCAAAGTGAATGTGGAAGGAACAACTTGGGTTACAAAAGCTGTGATTCCTAGTATGATTAAGAAGAAAAAAGGTGCTATTATTAACATTGGTTCTGGTTCTACTGTTGTTCTTCCTTCTTATCCTCTTGTCACACTTTATGCAGCTTCAAAAGCGTATCTTGCAATGTTCTCTTCATGCATCAATTTGGAATACAAGCATCAAGGAATTGACATCCAGTGTCAGGTTCCATTATTTGTGTCAACAAAAATGACAAGAATGAGAGCATCTCTTTTTGTTCCAACACCAGAAATATATAGCAAAGCATGCACAAAATGGATTGGCTATGAAAAACTGGTTGTACCTTACTTCTTTCATGAGCTGCAATCCTTTCTTATAAGGACAATTCCAGATGTATTTTTGGATTCCTACATGCTTCGTTATTTTCTAAACATGCGTAAAAGAGGACTCATTAAGGATTCACAAAAGGCATCTAAGTAG 945 0.3524 MDFQDFFLAVTITLGFIKICKSLFHFLNWIWIMFLRPTKQLKKYGSWAIITGSTDGIGKAMAFEFASKGLNILLVGRNPLKLETTSKQIIDKHGGNVEVKSVVIDMQNISGKEIMKRVEEAIDGLDVGILVNGAGVAYPYARYFHEVDLDLMDSIIKVNVEGTTWVTKAVIPSMIKKKKGAIINIGSGSTVVLPSYPLVTLYAASKAYLAMFSSCINLEYKHQGIDIQCQVPLFVSTKMTRMRASLFVPTPEIYSKACTKWIGYEKLVVPYFFHELQSFLIRTIPDVFLDSYMLRYFLNMRKRGLIKDSQKASK* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4729 314 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 3 311 - -
Tpr2g4729 314 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Tpr2g4729 314 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Tpr2g4729 314 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Tpr2g4729 314 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Tpr2g4729 314 PRINTS Glucose/ribitol dehydrogenase family signature 223 240 IPR002347 -
Tpr2g4729 314 PANTHER RH59310P 3 311 - -
Tpr2g4729 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Tpr2g4729 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Tpr2g4729 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Tpr2g4729 314 Pfam short chain dehydrogenase 47 241 IPR002347 -
Tpr2g4729 314 Gene3D - 40 270 - -
Tpr2g4729 314 PIRSF 11-beta-HSD1 2 307 - -
Tpr2g4729 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 307 IPR036291 -
Tpr2g4729 314 CDD 17beta-HSD1_like_SDR_c 45 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4729 Tpr-Chr2 52669750 52674582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4729 4 311 Lipid Metabolism Gene Families AT1G67730 51.125 2.89e-113 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4729 K10251 - gmx:100816067 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1071 3 9762870 9766547 Tpr2g4729 2 52669750 52674582 PCT