Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4722 ATGGATAATGGTTGCTTTTCTTCGCCTCGGCGTGATTTTCCTAATGGTTTAAGAGTTCTTGTTGTTGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTTAAAAAGTGTAATTATGAAGTGACGACGTGTTGCTTAGCAAGACATGCTCTAAGCTTGCTTCGTGAAAGGAAAGACGGATACGATATAGTGATCAGCGATGTAAACATGCCCGACATGGACGGTTTCAAACTTCTTGAGCACGTTGGACTTGAAATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGCGTTCAACACGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGCTGCGAAATATATGGCAACATGTATTCAGAAAAAGGATACACGAGGTTAGAGACTTTGAAAATTTCGAGAGTTTTGAGAGCATGCACTTGATGACAAATGGATCAGAACTGTCCGAGGAGGGGAACCTGTTTGCTTTAGAAGATATGACCACAACGAAGAAAAGAAAAGATTTAGATAACAAACACGACGACAAAGAATTTCTCGATTCATCTTCCTCAAAGAAAGCCAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGTTTTGATATTGGTCCGAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGATAACGAACAAAAATCTTCCCCAAGTGGAATGAAGCATTCTGATTTACCTTCAAAAGATGTAGGAAATTTCAATTTTCCGAACTCAGCAATCAAGCAACAAAACGATGCTTCAATTGACAGATGCAACTATTCAGAAGGAACCTTACATCATCAGAACATGGAAACTAAAAGTCATGAAGGTAATCCCAAAGGAATTGTTCCACATTCCACCACTGCAGAAAAGGCAAGACCTTTGACTGGTAACATCACTGATACAAATATTCAACCTTTTGCTTCGCTCGAATCAGAAAGAAAACATGCAGCGTTTGATTGCACCATGTCAATACCGTATTCTTGGACTGATATTCCAAAATCACAGCTCAAGAAAGAACAAAAGCCAGTTGTTCATCTAGAGGACAACTTCAACTTGTTGCCTTTCCATGGTAAGAAGCATAACATTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCAACTCCCTCTATAACCGAGCAAGATGTTGCTGCTTGTATAGAAACCAAACCTAGGTTTTCTGGTTACAAGAAAGACTATACTAGTTCAGTGAGTTCAATAAGAAGTTCAGTTGACACCTTTCCTTTCCGACCCGGAAACCTTATGATGAATGATCAACCTTCACAACCCATTTCAACTACTAATTTCAGCTTAAAAACACAGTCATCTAATAATCTCAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTCGGAGGCGAGGCTGCTTCTGCAGCACCTTTGGACGAGGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAGCCGAATATAGGAATGTCTGAGTATTATGATCCAGGGCTTCTCACAGAAGTTCCAAATCACTTATATGATTCAGCAGATTATTTAGTAATTGATCAAGGTCTATTCATAGCATGA 1704 0.3897 MDNGCFSSPRRDFPNGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVRDFENFESFESMHLMTNGSELSEEGNLFALEDMTTTKKRKDLDNKHDDKEFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDIGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSPSGMKHSDLPSKDVGNFNFPNSAIKQQNDASIDRCNYSEGTLHHQNMETKSHEGNPKGIVPHSTTAEKARPLTGNITDTNIQPFASLESERKHAAFDCTMSIPYSWTDIPKSQLKKEQKPVVHLEDNFNLLPFHGKKHNIQVDQSQSIASISSTPSITEQDVAACIETKPRFSGYKKDYTSSVSSIRSSVDTFPFRPGNLMMNDQPSQPISTTNFSLKTQSSNNLSCISDLESYQRNLLFGGEAASAAPLDEDLYFYWHNMNFGQPNIGMSEYYDPGLLTEVPNHLYDSADYLVIDQGLFIA* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4722 567 CDD REC_typeB_ARR-like 19 133 - -
Tpr2g4722 567 Pfam Myb-like DNA-binding domain 201 250 IPR001005 -
Tpr2g4722 567 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 542 - -
Tpr2g4722 567 PIRSF RR_ARR_type-B 2 539 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tpr2g4722 567 SUPERFAMILY CheY-like 15 141 IPR011006 -
Tpr2g4722 567 Gene3D - 197 257 - -
Tpr2g4722 567 SMART REC_2 17 129 IPR001789 GO:0000160
Tpr2g4722 567 Gene3D - 17 196 - -
Tpr2g4722 567 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 251 IPR006447 GO:0003677
Tpr2g4722 567 SUPERFAMILY Homeodomain-like 197 255 IPR009057 -
Tpr2g4722 567 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Tpr2g4722 567 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 542 IPR045279 GO:0009736
Tpr2g4722 567 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4722 Tpr-Chr2 52581743 52586639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4722 13 264 Response Regulator Gene Family AT2G25180 55.000 8.29e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr2g4722 Response_reg 2.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4722 - K14491 gmx:100797421 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4722 2 52581743 52586639 Tpr2g4722 2 52581743 52586639 ECH
Tpr2g4722 2 52581743 52586639 Tpr3g1339 3 11848263 11851488 PCT