Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4712 ATGTATCTATCATCAGAAAAGCCTCGTCCAATCGATTTCTACAAAGAAGAAGCAAGAGACATGATGATGGAAGTTGTAACCAACGCCGATCTTCCACCACCACCACATCCACCACCACCGCAACCGCAACAACAACACCATCACCATCAACTCCAACAAGCACCACCGCCACAAATGATTCTAACTGCAGAAAGTAGCGGTGAAGATCCTGAGATGGAGATCAAAGCTCCTAAAAAACGAGCTGAAACTTGGGTACAAGATGAGACACGAAGTCTGATTGGTTTAAGAAGAGAGATGGATTCACTTTTCAATACTTCGAAATCGAATAAGCATCTTTGGGAACAAATTTCGGCGAAGATGAGAGAAAAGGGTTTTGATCGGTCACCGACTATGTGTACTGATAAATGGAGGAATCTTTTGAAAGAGTTTAAGAAAGCTAAACATCATCAAGATAGAGGTGGAAGTGGTTCTGGGAAAATGAGTTGTTATAAAGAGATTGATGAGATCTTAAGAGAGAGGAGTATTGATGATGCCAACATTTCTTTTGGGCCTGTTGAAGCTTCTGGAAGACCAACACTCAATCTTGAAAGAAGTTTGGATCATGATGGACACCCTCTTGCCATTGCCGCAGCTGAAGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAAACTCCCGGAAATGGTGGGGAAACTCAGTCTTGCTGTGGAAGGGTTATATCAGTCAAATGGGGCGATTATACAAGACGAATAGGTATTGATGGCACTCCCGAAGCCATCAAGGAGGCAATTAGGGCTGCTTTTAGGTTGAGAACTAAACGTGCATTCTGGTTGGAGGATGAGGAACAAATTATCAGAAGCATTGACCGTGACATGCCTATTGGAAATTACACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTATGCCTATATGATGAGTCTGACCGTATCCCTGTGCATACTGAAGAGAAGATATTTTACACCGAAGATGATTACCGTGAGTTTCTGGCACGTCGGGCTTGGACATGTCTACGAGATCTTGACGGTTATAGAAATATTGACAATATGGATGATCTTCGACCTGGTGCCATATACCGAGGTGTAAGTTGA 1116 0.4319 MYLSSEKPRPIDFYKEEARDMMMEVVTNADLPPPPHPPPPQPQQQHHHHQLQQAPPPQMILTAESSGEDPEMEIKAPKKRAETWVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHQDRGGSGSGKMSCYKEIDEILRERSIDDANISFGPVEASGRPTLNLERSLDHDGHPLAIAAAEVAASGVPPWNWRETPGNGGETQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPIGNYTLHLDEGMAIKVCLYDESDRIPVHTEEKIFYTEDDYREFLARRAWTCLRDLDGYRNIDNMDDLRPGAIYRGVS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4712 371 ProSiteProfiles Myb-like domain profile. 76 140 IPR001005 -
Tpr2g4712 371 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 6 370 - -
Tpr2g4712 371 CDD GT1 82 147 - -
Tpr2g4712 371 SMART sant 80 142 IPR001005 -
Tpr2g4712 371 MobiDBLite consensus disorder prediction 23 55 - -
Tpr2g4712 371 MobiDBLite consensus disorder prediction 30 44 - -
Tpr2g4712 371 Gene3D - 84 146 - -
Tpr2g4712 371 PANTHER - 6 370 - -
Tpr2g4712 371 Pfam Myb/SANT-like DNA-binding domain 83 169 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4712 Tpr-Chr2 52505557 52511934 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4712 56 370 Trihelix Transcription Factor Family AT3G25990 66.667 1.61e-168 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr2g4712 Myb_DNA-bind_4 6.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4712 - - ccaj:109807736 605.905