Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4684 ATGATGGATGTTTCTGAGGTCGAGGAAAGTTTCTTTGCAGCAAGTGATGCCAAGTTACATGCAGAAATGTGCAGAAGTCTTTCTGCAATATATTGTAAAATATTGTCAATATTTCCTTCTTTAGAAGCAGCTAGGCCTCGGAGCAAATCTGGAATTCAAGCATTATGTTCACTGCATGTAGCCTTAGAGAAGGCGAAGAACGTACTTCAGCACTGCACAGAGTCTAGTAAACTTTACTTGGCTATAACTGGAGATTCCGTTCTTGTAAAATTTGAGAAGGCCAAGTGTGCTATTGTAGATAGTCTTAAGCTGGTAGAAGATATTGTTTCCCAATCAATTGCATGTCAGATTGATGAAATTGTGAACGAAATTTCTGGTATGGTGTTTGCGCTTGATCCATCAGAGAAACAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGATAGAAAGTTTAACAACTCTAATGACAGTAGTGAACTTGAGTGTTTTCATATGGCTGCTACTAAACTTGGAATCACGTCTTCCAGAGCAGCTCTCACTGAAAGAAGAGCTCTAAAAAAACTCATTGAAAGGGCTCGGGCCGAGGAAGACAAGAGGAAGGAATCAATTATTGCATATCTATTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAAGGTTCTCAACCTTGTTCTCCCACCGTTCAGAGACCCCTCGAGGATGGTGTTCCTGCTGGTCATTGTCAAGCCTTTGATAGACAGATGTCAAAACTTAGTTCCTTTAATTTTAAGCCGAACAATAAGAAATCGGGACAAATGCCCCTTCCACCAGAAGAATTAAGGTGTCCAATCTCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGACAGACATATGAAAAAGCTTGTATAGAAAAATGGTTCAATGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTCACACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTTGTAGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCCGAAGGTCCTCCCGAATCTCTTGATTTTAATTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAAATGAAGGGTGTCAAAGTTGTTCCTCTCGAAGAGAATGTTATCTTAGAGAAAACTGAGGGAAATGTAACTGAAACTTTGTCTACACAAGAAGAGGAAGACAGTGAGCAGTATCTTAGTTTTCTGAAAGTATTGACTGAAGGGAACAATTGGAAGAAAAAGTGTAAAGTAGTAGAGAGGTTGAGGCTGTTGCTGCGGGACGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTTCAGTTCCTGCAATCAGCTGTGCGTGAAGGGCATGTGAAGGCTCGGGAAAATGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAACTTATGATATCAGCAGGAATCTTATCATTGTTGGAGGAAATGGTAATGATTTCAAGCACCAGTTCATACAGTTGTGCAACCGCCCTGTATCTGAATCTTTCTTGCCTCGAAGAAGCCAAGCCAGTGATTGGCGCGAGTCAGGCTGTGAAGTTCCTGATCCAGATGCTTCAACCTAAGACAGAAGTCCAGTGCAAGATGGATGCCCTTCATGCACTCTATAATATTTCTACTGTGTCCTCGAATGTTTCAAACCTTATTTCTTCTGGCATCATCAATGGCCTACAATCCCTTCTTGTTGGCCAAACTGATTGCATGTGGTCAGAAAAAAGCATAGCTGTTTTGGTTAATTTGGCGGTTTCTCAGGTAGGAAGAGATGAAATGATCTTGAATCCTGAAGTGATAACCACGTTGGCTTCTATACTTGATACCGGTGAATCATTAGAGCAGGAACAAGCTGTGTCTTGTCTCCTAATATTATGTAACAGGAGTGAGAAATGTTGTGAGATGGTCTTGCAAGAAGGGGCTATACCTGCATTGGTGTCAATATCGGTAAATGGAACCTCAAGAGGAAGAGAGAAAGCTCAAAAGCTGTTGATGCTCTTTCGAGAGCAGCGACAACGAGACAATTCACCTGCTAAGACTCAATACTGCTCACCTGAAGCTGGTGATTTGTCCATGCCTTCTCCAGAAGCGAAACCGCTAAGTAAATCAATATCTAGAAGAAGAGTGGGGAAAGCTTTAAGTTTTCTATGGAAAAGCAAGAGCTATTCTGTTTACCAGTGCTAG 2307 0.4114 MMDVSEVEESFFAASDAKLHAEMCRSLSAIYCKILSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCTESSKLYLAITGDSVLVKFEKAKCAIVDSLKLVEDIVSQSIACQIDEIVNEISGMVFALDPSEKQVGDDLIALLQQDRKFNNSNDSSELECFHMAATKLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRPLEDGVPAGHCQAFDRQMSKLSSFNFKPNNKKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYEKACIEKWFNDGHNTCPKTQQKLTHLSLTPNYCVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESTNSRSVNSVNSCKMKGVKVVPLEENVILEKTEGNVTETLSTQEEEDSEQYLSFLKVLTEGNNWKKKCKVVERLRLLLRDDEEARIFMGANGFVEALFQFLQSAVREGHVKARENGAMALFNLAVNNNRNKELMISAGILSLLEEMVMISSTSSYSCATALYLNLSCLEEAKPVIGASQAVKFLIQMLQPKTEVQCKMDALHALYNISTVSSNVSNLISSGIINGLQSLLVGQTDCMWSEKSIAVLVNLAVSQVGRDEMILNPEVITTLASILDTGESLEQEQAVSCLLILCNRSEKCCEMVLQEGAIPALVSISVNGTSRGREKAQKLLMLFREQRQRDNSPAKTQYCSPEAGDLSMPSPEAKPLSKSISRRRVGKALSFLWKSKSYSVYQC* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4684 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Tpr2g4684 768 PANTHER U BOX DOMAIN-CONTAINING 2 751 - -
Tpr2g4684 768 SUPERFAMILY RING/U-box 277 355 - -
Tpr2g4684 768 SUPERFAMILY ARM repeat 430 709 IPR016024 -
Tpr2g4684 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Tpr2g4684 768 Gene3D - 403 721 IPR011989 -
Tpr2g4684 768 CDD RING-Ubox_PUB 284 326 IPR045210 -
Tpr2g4684 768 Coils Coil 176 196 - -
Tpr2g4684 768 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 751 - -
Tpr2g4684 768 SMART arm_5 456 500 IPR000225 GO:0005515
Tpr2g4684 768 SMART arm_5 543 584 IPR000225 GO:0005515
Tpr2g4684 768 SMART arm_5 502 542 IPR000225 GO:0005515
Tpr2g4684 768 MobiDBLite consensus disorder prediction 713 744 - -
Tpr2g4684 768 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Tpr2g4684 768 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Tpr2g4684 768 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4684 Tpr-Chr2 52157635 52162420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4684 2 767 U-box Gene Family AT1G24330 65.217 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4684 - - gmx:100804344 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4684 2 52157635 52162420 Tpr2g4684 2 52157635 52162420 ECH
Tpr2g4684 2 52157635 52162420 Tpr3g1317 3 11668327 11674139 PCT