Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4678 ATGGTGAAGTACTCCAGAGAACCTGATAATCCCACCAAATCAACCAAAGCCAGAGGTGCTGACCTTAGGGTGCATTTCAAGAACACCAGGGAAACAGCGTTCGCCATCAGGAAGTTGCCCCTGATCAAAGCCAAGAGATACTTGGAAGATGTTTTGGCTCACAAACAGGCTATTCCCTTCAGACGTTTCTGCCGTGGTGTTGGCAGGACCGCCCAAGCTAAGAATAGACATTCCAATGGGCAAGGACGCTGGCCCGCCAAGTCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTCTATGTTTCTCATATCCAGGTCAATCAAGCTCAAAAGCAAAGACGTCGTACCTACAGGGCTCATGGAAGAATCAATCCCTACATGTCATCTCCATGCCACATTGAGTTGATATTGTCTGAGAAGGAAGAGGCTGTCCAGAAAGAGCCTGAGACCCAGTTGGCAACAAACAAGAAGAAGTCTCAAGCTCTTCGAACTGGCGCTTCATCTTAA 549 0.4699 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFAIRKLPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPETQLATNKKKSQALRTGASS* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4678 182 CDD Ribosomal_L22 16 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Tpr2g4678 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 182 IPR005721 GO:0003735|GO:0006412|GO:0015934
Tpr2g4678 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Tpr2g4678 182 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 182 - -
Tpr2g4678 182 MobiDBLite consensus disorder prediction 156 182 - -
Tpr2g4678 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Tpr2g4678 182 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Tpr2g4678 182 MobiDBLite consensus disorder prediction 168 182 - -
Tpr2g4678 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Tpr2g4678 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Tpr2g4678 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4678 Tpr-Chr2 52090331 52092317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4678 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.813 5.25e-116 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4678 K02880 - gmx:100816536 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4678 2 52090331 52092317 Tpr2g4678 2 52090331 52092317 ECH
Tpr2g4678 2 52090331 52092317 Tpr3g1311 3 11606793 11610005 PCT