Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4655 ATGGAGTGGAACGCGAAATCTCCCGGGCAATGGGACTGGGAAAACTTGTTCTTGTTGAATTCAAAGGCAACAGAAAATCACAGGTTACAGTCTACTGATTGGAGTGCGGAGACAGACCGAGAAATCAATGTCGGAGTGTTGTTTCCATCAGGTGATAATGGTTATTCCATGTCGAAACTAGCACACGGTTCATCCTCGAGGAGCTCAAAATCTCCTTCCAATAATTCATCATCAAATGGAGAAAGCAAGACCTCTATGTTAACTCAAGAAGGTTCTCAAGACAATTCCACCGGTAAGAAAGAATTGTCTAAAGGAGATCCATTTGAAACTTCTCCAGCAGCAGAACCATTGCTCACACTAAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTGCCCTGAAACTCATTCCAAGAAAGCCTCTTCCTCTGCGGTTCCGCTTTCATGCAAAAAGAAAGGTAAATCGAAAAGTCCGGACTTACTACAGCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTATCTTCTGCTAAAGAGTACCATCGAAAACATCGTGTATGTGAAAGTCATGCCAAATCACCTATGGTGGTTGTAGCCGGTTTAGAGCTACGATTTTGCCAGCAATGTAGCAGGTTCCATTCTGTGTCAGAGTTTGATGATAAAAAAAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCCGCCTGAAGCAGTGCAACTGAATCCATCAGCTCTGCATTCTTCACCCTATGGTATAACTCTCAAGAATCGGAGGCAAATAATGGGCTCGTTCGATTTTTCAAGGACTGCTACAAATTTACCATGGCAAGGCATACTAAGTAGCAAGCTCCCCCAAACAAAAGATTTTATGCTCAAACCTCCAAAAGCCACCTTCAACAAGATTGTCACTATGCTTTCTGATGATTCCAATGGCCATCTTGCATCCAAAGGCACAGGATCCAAGAGTACATTTCCAGAAGATCAAGCTACCTTGTCTGATCCAAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATATGATACCAAGTCCCTCTCCCTCGATCACTCCAACCGAACAACCGGTACTACTCAGTCTATAACACACACAATTTCTCAGCGCTCTCCATTTCCGTCGTCCGAATACTGGCACACTGATCAGCAACACACCAACTCCAGCACCTGTATCTCATTCTCAGGTTACGACAATAGCAGTCGCTTTCAAGACTTTCAGCTTTTCAATGCACCCTTTGAGTCAAGTTTCCCTTGCAGCCAGCTGGATTAA 1326 0.4465 MEWNAKSPGQWDWENLFLLNSKATENHRLQSTDWSAETDREINVGVLFPSGDNGYSMSKLAHGSSSRSSKSPSNNSSSNGESKTSMLTQEGSQDNSTGKKELSKGDPFETSPAAEPLLTLKLGKRFYFEDVCPETHSKKASSSAVPLSCKKKGKSKSPDLLQPSCQVEGCGLDLSSAKEYHRKHRVCESHAKSPMVVVAGLELRFCQQCSRFHSVSEFDDKKRSCRRRLSDHNARRRKPPPEAVQLNPSALHSSPYGITLKNRRQIMGSFDFSRTATNLPWQGILSSKLPQTKDFMLKPPKATFNKIVTMLSDDSNGHLASKGTGSKSTFPEDQATLSDPNATQDVNRALSLLSTNSWGAYDTKSLSLDHSNRTTGTTQSITHTISQRSPFPSSEYWHTDQQHTNSSTCISFSGYDNSSRFQDFQLFNAPFESSFPCSQLD* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4655 441 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 440 IPR044817 GO:0003677
Tpr2g4655 441 Pfam SBP domain 165 238 IPR004333 GO:0003677
Tpr2g4655 441 MobiDBLite consensus disorder prediction 59 114 - -
Tpr2g4655 441 ProSiteProfiles Zinc finger SBP-type profile. 162 239 IPR004333 GO:0003677
Tpr2g4655 441 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 21 440 - -
Tpr2g4655 441 MobiDBLite consensus disorder prediction 318 341 - -
Tpr2g4655 441 MobiDBLite consensus disorder prediction 59 96 - -
Tpr2g4655 441 MobiDBLite consensus disorder prediction 223 242 - -
Tpr2g4655 441 Gene3D - 161 226 IPR036893 GO:0003677|GO:0005634
Tpr2g4655 441 SUPERFAMILY SBT domain 163 244 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4655 Tpr-Chr2 51856770 51860787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4655 1 428 SBP-box Gene Family AT5G43270 36.659 4.22e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr2g4655 SBP 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4655 - - gmx:100781289 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4655 2 51856770 51860787 Tpr2g4655 2 51856770 51860787 ECH