Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4647 ATGGGAAGAGGAAGAGTGGAATTGAAGAGAATTGAGAACAAAATTAACAGACAAGTTACCTTTGCTAAACGAAGAAATGGTCTATTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCCGAGGTTGCTCTCATCGTCTTCTCCAATCGAGGAAAACTCTATGAGTTTTGCAGCACTTCTAGCATGCTCAAAACTCTTGAGAGGTATCAGAAATGCAACTATGGAGCACCTGAAGCTAATGTGTCATCAAAGGAAGCTTTGGTATTGGAATTAAGCAGTCAACAGGAATACTTGAAGCTTAAGGCACGTTATGAATCTCTACAACGCTCTCAAAGGAACCTTATGGGAGAAGATCTTGGTCCTCTTAGCAGCAAAGATCTTGAAACACTTGAAAGACAGCTAGATTCATCCTTGAAGCAAATCAGATCCACAAGGACCCAATTTATGCTGGATCAGCTGGGTGATCTTCAACGTAAGGAACACTTGCTATGTGAAGCAAACAGAGCTCTCAGACAAAGGATGGAAGGGTATCAAATAAATTCTCTCCAACTGAATCTGAGTGCTGAAGATATGGGATATGGCCGTCATCATCAAGTTCACAACCAGGGTGATGATCTATTTCAACCAATTGAGTGTGAACCAACCTTACAAATTGGATATCAGGGTGATCCAGGATCAGTGGTGACAGCAGGCCCAAGCATGAATAATTTCATGGGTGGATGGTTACCATGA 735 0.415 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEANVSSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHQVHNQGDDLFQPIECEPTLQIGYQGDPGSVVTAGPSMNNFMGGWLP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4647 244 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Tpr2g4647 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g4647 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g4647 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr2g4647 244 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g4647 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g4647 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 228 - -
Tpr2g4647 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tpr2g4647 244 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g4647 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g4647 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr2g4647 244 Coils Coil 128 148 - -
Tpr2g4647 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Tpr2g4647 244 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Tpr2g4647 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4647 Tpr-Chr2 51739989 51743941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4647 1 244 MADS-box Gene Family AT1G24260 72.764 1.29e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g4647 K-box 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4647 - - gmx:100778931 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4647 2 51739989 51743941 Tpr2g4647 2 51739989 51743941 ECH
Tpr2g4647 2 51739989 51743941 Tpr3g1295 3 11455322 11462625 PCT
Tpr3g1294 3 11449292 11454840 Tpr2g4647 2 51739989 51743941 PCT