Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4602 ATGGCTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAGAGTGCTTCTCAGACCAGCCAAGCCCCTTCACCCATGCTTAACTACCTTCGCCACATGTCGTCAAGCAAGCTTTTTATTGGAGGTCTTTCTTATGGAGTCGATGACCAATCTCTTAGGGATGCATTCTCAACCTATGGAGATGTGACTGAGGCAAGAGTTATCACTGATAGAGACACCGGAAGATCAAGGGGATTTGGATTTGTCAGCTACACCAGTGAGGATGCTGCAACTTCAGCACTTGCTATGGATGGGCAGGATTTAAACGGGCGACCCGTTCGTGTGTCTTATGCAAATGATAGACCTTCTGCACCTCGTGGTGGTGGCGGTGGTGGCTATAATGAATTTTCTAACCGTGGTGGTGGCGGCGGTGGTTGGTGA 417 0.4892 MAFCNKIGNLLRQSASQTSQAPSPMLNYLRHMSSSKLFIGGLSYGVDDQSLRDAFSTYGDVTEARVITDRDTGRSRGFGFVSYTSEDAATSALAMDGQDLNGRPVRVSYANDRPSAPRGGGGGGYNEFSNRGGGGGGW* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4602 138 SUPERFAMILY RNA-binding domain, RBD 26 137 IPR035979 GO:0003676
Tpr2g4602 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Tpr2g4602 138 MobiDBLite consensus disorder prediction 111 138 - -
Tpr2g4602 138 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 135 - -
Tpr2g4602 138 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 135 - -
Tpr2g4602 138 Gene3D - 11 138 IPR012677 -
Tpr2g4602 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 105 IPR000504 GO:0003723
Tpr2g4602 138 SMART rrm1_1 36 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4602 Tpr-Chr2 51016181 51018031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4602 9 114 C2H2 Transcription Factor Family AT2G19380 29.907 7.08e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4602 - - gmx:100499841 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4602 2 51016181 51018031 Tpr2g4602 2 51016181 51018031 ECH