Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4569 ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCTGCGGCTGAAAATGCACCACCAACTTCTGCTGCTAACAATGCCAACAACAACAACAACACTCAACCTCCTTCTCGACCTGTTTATGTTCCTCCTCATCTGAGGAACCGTGGACCTACAGCACCAGCACCAGCTTCGTCGGAGAGATTTTCTGCTCCGACTGGTTTTGATAATTCCGGATCGCGGTGGGCGCCGCCTCCAAGGAACGATTATCGTGGACGTGGTGGTGGTGGTTTTGGGAATAGGACTGGTGGTGGTGGTGGTTGGGATCGGCGTGAAGCGAATCCGTTTGCGGATCAGGATGATTCTGAGGAGCCTATTACTCAAGAGGAGCAGGAGAGTACAGGGATTAACTTTGATGCTTATGAGGATATTCCGGTGGAGACTAGCGGTGGAAATGTTCCTCCTCCTGTGAATACTTTTGCTGAGATTGACTTGGGTGAAGCACTTAATCAGAATATTAGGAGATGCAAATATGTGAAGCCGACGCCTGTTCAGCGGCATGCAATACCGATATCTCTTGCAGGAAGGGATTTGATGGCTTGTGCACAGACAGGTTCTGGAAAGACTGCTGCTTTTTGTTTTCCGATTATCAGTGGAATTATGACTGGACAACCTGCGCAGAGGCCACCTCGTGGGGTGCGTACCGTGTGTCCACTTGCGCTCGTTCTCTCGCCAACTAGGGAGCTATCGATGCAGATACACGAAGAGGCTAGGAAGTTTTCATATCAAACAGGGGTAAGAGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGAGAGCTTGAGAGAGGGGTAGACATTCTTGTCGCAACTCCAGGAAGACTGGTAGATTTGTTGGAAAGGGCTAGAGTTTCACTTTCACTGATTAGGTATTTGGCCTTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAGATAAGGAAGATAGTAGAACAAATGGACATGCCTCCGGCAGGTGTCAGACAAACTATGCTGTTCAGTGCCACTTTTCCAAAAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGATCAAGTACTGATTTGATTGACCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTGGAACACTGGTTGTGTCTTAATAATTTCCCAGCAACTACTATTCACGGTGACAGGACACAACAGGAAAGAGAAGCAGCATTGAGATCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGACATTCCTCATGTTGCACATGTAGTCAACTTTGACCTTCCCAATGATATTGATGATTATGTACACCGTATTGGAAGGACGGGGAGAGCAGGAAAGAAAGGTCTTGCAACTGCATTCTTTAATGAAAACAATTCATCCCTAGCAAGGTCTCTACAAGATTTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCGCGGTTCGCTGCACGATCATCATTTGGTGGAGGAAAGAATCGTCGATCAGGAGGCCGATTTGGTGGCCGCGACTTTCGAAGAGATGGTTCTTTTAATAGGGGTGGTTCTGATTACCAAGGTGCAGGAAATAGCAGTGGTGGATATGGGGCTTCTGGTGGGTATGGCGGAGGATATGGTGGTGGGTATGCAGGAAATAGTGCGGGTCCTGGGGTGACCAGTGCATGGGACTGA 1854 0.4736 MRSSWADLAANSAAENAPPTSAANNANNNNNTQPPSRPVYVPPHLRNRGPTAPAPASSERFSAPTGFDNSGSRWAPPPRNDYRGRGGGGFGNRTGGGGGWDRREANPFADQDDSEEPITQEEQESTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSLIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRTQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNSSLARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGRFGGRDFRRDGSFNRGGSDYQGAGNSSGGYGASGGYGGGYGGGYAGNSAGPGVTSAWD* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4569 617 MobiDBLite consensus disorder prediction 1 35 - -
Tpr2g4569 617 Gene3D - 105 368 IPR027417 -
Tpr2g4569 617 CDD DEADc_DDX3_DDX4 151 372 IPR044763 GO:0003724|GO:0005524
Tpr2g4569 617 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 544 IPR001650 -
Tpr2g4569 617 CDD SF2_C_DEAD 378 514 - -
Tpr2g4569 617 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 55 581 - -
Tpr2g4569 617 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Tpr2g4569 617 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 581 - -
Tpr2g4569 617 SMART helicmild6 424 505 IPR001650 -
Tpr2g4569 617 MobiDBLite consensus disorder prediction 558 572 - -
Tpr2g4569 617 Pfam DEAD/DEAH box helicase 174 355 IPR011545 GO:0003676|GO:0005524
Tpr2g4569 617 MobiDBLite consensus disorder prediction 1 128 - -
Tpr2g4569 617 Coils Coil 515 535 - -
Tpr2g4569 617 Gene3D - 369 548 IPR027417 -
Tpr2g4569 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 521 IPR027417 -
Tpr2g4569 617 MobiDBLite consensus disorder prediction 554 587 - -
Tpr2g4569 617 Pfam Helicase conserved C-terminal domain 390 505 IPR001650 -
Tpr2g4569 617 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 366 IPR014001 -
Tpr2g4569 617 SMART ultradead3 169 381 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4569 Tpr-Chr2 50554236 50562327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4569 139 537 Eukaryotic Initiation Factors Gene Family AT3G19760 32.500 2.02e-64 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4569 K11594 - gmx:100781743 912.138