Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g4562 | ATGAGAGGAAGAAGCTACACTCCATCGCCACCACCACGTTACAGCAGAAGAGGCGGTGGAAGAAGTCCAAGTCCCCGTCGTCGTTACGCTCCCCGTCAAAGCGATCTACCTACCAGTCTTCTTGTTCGTAACCTTCGCCATGACTGTAGACCTGAAGATCTTCGTAGACCTTTCGGTCAATTTGGTCCTCTTAAGGACATTTATCTCCCTAAAGATTATTACACTGGACAGCCGCGTGGATTTGGTTTTATCCAATTTGTGGATCCTGCTGATGCTGCCGATGCTAAATATCATATGGATGGTCAAGTTCTTCTTGGTAGGGAGCTGACTGTTGTTTTTGCTGAAGAAAATAGAAAGAAGCCAACTGAGATGAGGGTCAGAGAGAGAAGTGGTAGGTATTCTGATAGAAGAAGGTCTCCCGCACGCCACTCTCGTTCACCCCGCTATTCCCGGTCTCCACCACCTCGTCACAGATCCCGCTCTCGCGGAAGTCGTGACTATTATTCCCCTCCTAAACGAAGGGAATATTCGAGATCTCTATCACCTGAAGATAGAAGACACAGTCGAGAAAGATCACAGCATAGCAGAGAGAGGTCATACTCACGCTCTCCACCCAAAAATGTGGATGCGAGAAGCCGTAGTCAGAGTCCAGTGAAAGACCCAGTCCAGAGCAGAAGTCCAAGTCCGAACCATGATGTAAGGGAATCGCCCCGCAGTAGGTCCCCCAGTCAGTGA | 735 | 0.4939 | MRGRSYTPSPPPRYSRRGGGRSPSPRRRYAPRQSDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRVRERSGRYSDRRRSPARHSRSPRYSRSPPPRHRSRSRGSRDYYSPPKRREYSRSLSPEDRRHSRERSQHSRERSYSRSPPKNVDARSRSQSPVKDPVQSRSPSPNHDVRESPRSRSPSQ* | 245 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g4562 | 244 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 40 | 109 | IPR000504 | GO:0003723 | |
Tpr2g4562 | 244 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 141 | IPR035979 | GO:0003676 | |
Tpr2g4562 | 244 | MobiDBLite | consensus disorder prediction | 159 | 204 | - | - | |
Tpr2g4562 | 244 | MobiDBLite | consensus disorder prediction | 118 | 244 | - | - | |
Tpr2g4562 | 244 | MobiDBLite | consensus disorder prediction | 138 | 158 | - | - | |
Tpr2g4562 | 244 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Tpr2g4562 | 244 | MobiDBLite | consensus disorder prediction | 205 | 230 | - | - | |
Tpr2g4562 | 244 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 38 | 116 | IPR000504 | GO:0003723 | |
Tpr2g4562 | 244 | SMART | rrm1_1 | 39 | 112 | IPR000504 | GO:0003723 | |
Tpr2g4562 | 244 | PANTHER | SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A | 1 | 228 | - | - | |
Tpr2g4562 | 244 | MobiDBLite | consensus disorder prediction | 118 | 137 | - | - | |
Tpr2g4562 | 244 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 1 | 228 | - | - | |
Tpr2g4562 | 244 | Gene3D | - | 4 | 130 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g4562 | Tpr-Chr2 | 50465819 | 50468721 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g4562 | 38 | 127 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 33.333 | 1.35e-09 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g4562 | K12900 | - | gmx:100775883 | 295.434 |