Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4562 ATGAGAGGAAGAAGCTACACTCCATCGCCACCACCACGTTACAGCAGAAGAGGCGGTGGAAGAAGTCCAAGTCCCCGTCGTCGTTACGCTCCCCGTCAAAGCGATCTACCTACCAGTCTTCTTGTTCGTAACCTTCGCCATGACTGTAGACCTGAAGATCTTCGTAGACCTTTCGGTCAATTTGGTCCTCTTAAGGACATTTATCTCCCTAAAGATTATTACACTGGACAGCCGCGTGGATTTGGTTTTATCCAATTTGTGGATCCTGCTGATGCTGCCGATGCTAAATATCATATGGATGGTCAAGTTCTTCTTGGTAGGGAGCTGACTGTTGTTTTTGCTGAAGAAAATAGAAAGAAGCCAACTGAGATGAGGGTCAGAGAGAGAAGTGGTAGGTATTCTGATAGAAGAAGGTCTCCCGCACGCCACTCTCGTTCACCCCGCTATTCCCGGTCTCCACCACCTCGTCACAGATCCCGCTCTCGCGGAAGTCGTGACTATTATTCCCCTCCTAAACGAAGGGAATATTCGAGATCTCTATCACCTGAAGATAGAAGACACAGTCGAGAAAGATCACAGCATAGCAGAGAGAGGTCATACTCACGCTCTCCACCCAAAAATGTGGATGCGAGAAGCCGTAGTCAGAGTCCAGTGAAAGACCCAGTCCAGAGCAGAAGTCCAAGTCCGAACCATGATGTAAGGGAATCGCCCCGCAGTAGGTCCCCCAGTCAGTGA 735 0.4939 MRGRSYTPSPPPRYSRRGGGRSPSPRRRYAPRQSDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRVRERSGRYSDRRRSPARHSRSPRYSRSPPPRHRSRSRGSRDYYSPPKRREYSRSLSPEDRRHSRERSQHSRERSYSRSPPKNVDARSRSQSPVKDPVQSRSPSPNHDVRESPRSRSPSQ* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4562 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Tpr2g4562 244 SUPERFAMILY RNA-binding domain, RBD 35 141 IPR035979 GO:0003676
Tpr2g4562 244 MobiDBLite consensus disorder prediction 159 204 - -
Tpr2g4562 244 MobiDBLite consensus disorder prediction 118 244 - -
Tpr2g4562 244 MobiDBLite consensus disorder prediction 138 158 - -
Tpr2g4562 244 MobiDBLite consensus disorder prediction 1 38 - -
Tpr2g4562 244 MobiDBLite consensus disorder prediction 205 230 - -
Tpr2g4562 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Tpr2g4562 244 SMART rrm1_1 39 112 IPR000504 GO:0003723
Tpr2g4562 244 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 228 - -
Tpr2g4562 244 MobiDBLite consensus disorder prediction 118 137 - -
Tpr2g4562 244 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 228 - -
Tpr2g4562 244 Gene3D - 4 130 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4562 Tpr-Chr2 50465819 50468721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4562 38 127 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 1.35e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4562 K12900 - gmx:100775883 295.434