Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4561 ATGAGGAATCCTAATTCATCATCAACAAATTCAAATAAGAAGAAGCAGAAAATCAACAACAATGGAAGCAGTAACAGCACAACAACTACACCTTGTTGCAGCAAGATTGGATTAAAGAGAGGACCATGGACATCTGAAGAAGACGAAGTGTTATCAGAATACATTAAGAAAGAAGGTGAAGGTCGTTGGAGAACTTTACCTAAACGAGCTGGTCTTCTTCGTTGTGGTAAAAGCTGTCGTCTCCGTTGGATGAATTATCTTCGTCCTTCTGTCAAACGTGGTCAGATCGCTCCTGATGAAGAAGATCTCATTCTCCGTCTTCACCGTCTTCTCGGCAACAGGTGGTCATTGATAGCTGGGAGAATTCCAGGAAGAACTGATAATGAGATCAAGAATTATTGGAACACACATCTTAGTAAGAAACTCATTAATCAAGGGATTGATCCAAGAACACACAAGCCACTTAACAATATTAATCCATCTACTTCTTCAATAATCCCAAATATTAATCACCAAATCACTAATCATTTCACATCTTCACCCACTCCACACCATCATCCTATGCTTTACAATCAATCCAATCATCCTTCACATGATCATAATCATTATTATCCACAACAACAACAACAAGAAGCTAAGGAGGTTAATGATGATGATGCTAATTATGATTACTTAATTAATGATGTTTCTGCAATGGATAAAGCGGCAAACAATAACAGAGGGGATTGCGATAAAAGTAGTACCGATTATTGTTGCGATGATGGGTTTACTTCCTTCTTGGATTCATTGATCAATGATGATGCTTTTGCTGCACATCGATCGGAGAATGATCCGGCTGATCCTTTGATTTCATCTGCTGAACCATCAGCTTTTTGGGAATCACCACTTATGTCTACTAATTTCACCCAAAACAAAGACTCAACCAACACCGGCAAGCTTCATGATGCATGA 951 0.387 MRNPNSSSTNSNKKKQKINNNGSSNSTTTTPCCSKIGLKRGPWTSEEDEVLSEYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNNINPSTSSIIPNINHQITNHFTSSPTPHHHPMLYNQSNHPSHDHNHYYPQQQQQEAKEVNDDDANYDYLINDVSAMDKAANNNRGDCDKSSTDYCCDDGFTSFLDSLINDDAFAAHRSENDPADPLISSAEPSAFWESPLMSTNFTQNKDSTNTGKLHDA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4561 316 MobiDBLite consensus disorder prediction 1 30 - -
Tpr2g4561 316 Gene3D - 40 92 - -
Tpr2g4561 316 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Tpr2g4561 316 SUPERFAMILY Homeodomain-like 37 134 IPR009057 -
Tpr2g4561 316 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 25 279 - -
Tpr2g4561 316 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Tpr2g4561 316 CDD SANT 98 138 IPR001005 -
Tpr2g4561 316 CDD SANT 42 87 IPR001005 -
Tpr2g4561 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Tpr2g4561 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Tpr2g4561 316 SMART sant 92 140 IPR001005 -
Tpr2g4561 316 SMART sant 39 89 IPR001005 -
Tpr2g4561 316 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 25 279 - -
Tpr2g4561 316 Pfam Myb-like DNA-binding domain 97 138 IPR001005 -
Tpr2g4561 316 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Tpr2g4561 316 Gene3D - 97 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4561 Tpr-Chr2 50458476 50460031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4561 26 288 MYB Transcription Factor Family AT3G13540 53.208 9.69e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g4561 Myb_DNA-binding 4.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4561 K09422 - gmx:100782308 314.309