Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4558 ATGGATGAAACAATGGCAGCAAGATATTGGTGTCATGCTTGTTCTCAAATAGTTAGTCCCATAATGGGAATGGAGATGAAATGCCCAGTTTGTCAAGGTGGATTTGTTGAAGAAATGAGCAGTGCCACTGGTATTAGTGACTTGCCAAATATACCAGAACCTGATTTTGGACCGGATCGTTCTCCTTCCCTTTGGGCACCTATCTTGCTAGGCATGATGGGTAATCCGCGGCTTCGTAGAAGAATGAGACGTATAGAGCTTGAAGAAGACTATGATAGTGGTAATCGTGATGATGAAAATAGTGGTGTTGGACATTATGATCGAGAGCTTGAGTCCATCCTTCGAAGGAGGAGAAGAAGCTCAGCTACCATTCAACAATTGCTCCAAGGCATAAGAGCTGGATTGACATCTGAACCACAAGAGAATACTACTGACAGTGATGACCATGTTAGGGAAAGAGAAAGAGAGCATGTAATCTTGATTAACCCTTTTAATCAGACTATTATAGTTCAAGGTTCCTATGATTCAAACCGGGATCAAAATGATAATCCGAACCCCATTGGGTCTCTAGGTGACTATTTTGTAGGGCCTGGTTTGGATCTATTGTTGCAACATTTGTCAGAGAATGACCCTAATAGATATGGAACTCCACCTGCACCGAAGGAAGCCGTTGAAGCTCTACCTACTGTGAAGATCAATGAGAATTTGCAATGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGTCTCAATTGCGAGTGGATGAACCTAAGCAAGATTCTGATGTGTCAAGGAATCGCAGAAATCAAAGGGACGATGCAAATATCGGACATGCCAATGCCGATGCTGAAGGAGATAGTGAAGGGAGAAGTCCAAATGGGGGTAGAAGATTCTCGTTTCCGTGGCCTTTCAATGGATTATTTTCTTCATCAGCTTCTAGTTCCAGTTCAAATGGAAATGGTACTCAATCAGAAAGAAACTGA 1074 0.4246 MDETMAARYWCHACSQIVSPIMGMEMKCPVCQGGFVEEMSSATGISDLPNIPEPDFGPDRSPSLWAPILLGMMGNPRLRRRMRRIELEEDYDSGNRDDENSGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSEPQENTTDSDDHVREREREHVILINPFNQTIIVQGSYDSNRDQNDNPNPIGSLGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVEALPTVKINENLQCSVCLDDFEVGSEAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDEPKQDSDVSRNRRNQRDDANIGHANADAEGDSEGRSPNGGRRFSFPWPFNGLFSSSASSSSSNGNGTQSERN* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4558 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 284 IPR013083 -
Tpr2g4558 357 MobiDBLite consensus disorder prediction 131 151 - -
Tpr2g4558 357 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Tpr2g4558 357 SUPERFAMILY RING/U-box 227 288 - -
Tpr2g4558 357 CDD RING-H2_RNF126_like 237 279 - -
Tpr2g4558 357 ProSiteProfiles Zinc finger RING-type profile. 238 279 IPR001841 -
Tpr2g4558 357 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 339 - -
Tpr2g4558 357 Pfam Ring finger domain 237 279 IPR001841 -
Tpr2g4558 357 MobiDBLite consensus disorder prediction 284 321 - -
Tpr2g4558 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 339 - -
Tpr2g4558 357 MobiDBLite consensus disorder prediction 284 332 - -
Tpr2g4558 357 SMART ring_2 238 278 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4558 Tpr-Chr2 50403748 50406232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4558 140 285 C3H Transcription Factor Family AT1G26800 38.514 7.14e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4558 K11982 - gmx:100784876 457.603