Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4552 ATGGTGAGTGTCTCTGGCTTTGAAGAAGTTGTTGAGCCACCAGCTTTACCTCCATCACCTCCTGATGTGCTTCCTGATATGGAAACAGAACAAATAGCTCTCCCAACCTATTCTATTATCAGTAGGCCTGGTGTTGGGACCACAGGAAAGCGCATAGCTTTGCTTGTAAACCTCTTCAAAGTTGCTGCTGATGCTACAGATGCAACCTTTTTCCAGTATAGTGTTACTATCACTTCGGAAGATAAAAGAGTCATTGAAAACAAGGGCATCGGGAGAAAACTGATTGATAAGCTTCACCAAACATACTCTTCTGAACTTGGTGGAAAAAGCTTTGTGTATGATGGAGATAGAACTTTGTACACAGTCGGTCCTCTTCCAGATAATAAATTTGAGTTCACAGTATTACTTGAGGAATCATTTGCCAAGCACAGTACTGAGTGTCCTGGTGCTGATGGAAGCCCTCATGGGGAAAATAAAAGGTCAAAACGTTCTTTTCCGCCAAAGGCATTCACAGTGGAGATAAGTTTTTCTGCCAAAATACCCTTGCAATCCATTGCTCTTTCCCTTAAAGGGATTGAGTCATATGCTAATTCTCAGGATGCATTGAGGGTGCTTGATACCATACTGAGGCAGCGAGCAGCTAACAGAGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCGAAGAATTTCATTGATGTTGGAGGTGGAGTAACAGGAGTTCGGGGTTTCCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATATGGATGTGTCCACAACGATGATTGTAAAACCTGGACCTGTAATTGATTTTCTCCTAACCAACCAGAGTGTGAGGGAACCTCGTTATATTGACTGGGCAAAGGCCAAGAGAATGCTTAAAAATTTAAGAGTTCGTGCTACTCATCGTAATCAAGAATTCAAAATTTCTGGCTTGAGTGAGAAACCCTGCATTCAACAACTTTTTAGTTTGAAGATGAAAAATGGAGAAGACAGTAATGCGGAGAAGACAGTTGATGTTACTGTGTATGAGTATTTTGCTAAACACCGTGGCATTGAGCTTACCTCTTCTGCTTACCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCATCTTTTTACCCCTGGAGCTATGTTCACTTCTTCCCCTCCAGCGTTATACGAAGGCATTATCTCCTGTGCAAAGAGCATCTTTAGTTGAAAAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATGCTATAGGAAATTCTTGCTATGATGATGATGCTGTTCTTACGGCATGTGGCATTTCTATTGACAAACAATTCACTCCAGTTGAAGGTCGGGTTCTTGAGACACCAAAATTAAAGGTGGGTAAGAATGAGGACTGCTTCCCTAATAATGGAAGGTGGAACTTTAAAAACAAGACACTTCTACAACCATCACATATTGAATATTGGGCTGTTGTCAACTTTTCTGCACAATGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGAATTAATATTGAACGGCCATTTACTTTAATAGAGGAAGAAGCACAAATGAGAAAATCTAACCCGGTTGCAAGGGTTGAAAAGATGTTTGAACTGCTGATATCAAAACTTACTAAAAGACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGCAACATATATGGGCCCTGGAAAAGGAAGTGTCTGAGTGAAATTGGGGTTGTCACACAGTGTATTTCCCCTCTCAAGATCACTGACCAGTACCTTACCAATGTACTTCTTAAAATAAATTCTAAGCTTGGTGGAATAAATTCTTTGCTGGCAATTGAGCATTCTGGGAATCTTACCTTGCTTAAAGATACCCCAACAATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCGATCAGATATTCCATCCATAGCAGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCGAGGTATAGAGCATCTGTGAGATCGCAGTCACCTAAGGTTGAGATGATTGATGCTCTATTCAAGCCTTTGGGTGATGGAATTGATGATGGTATTATCAGGGAATTGCTTCTAGATTTCTATCATACAAGTAATCACAAACCAACTCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTCAACAGGTTTTGAATATAGAGCTTAACCAGATAATAAAGGCCTATAAATATATTGACGGGGTTGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATATAAAGCTGTTTCAAGCTAATGCTCTTGAAAACGTTCCTCCTGGGACAGTTGTCGACACAAAAATTGTGCATCCAAGAAATTATGATTTCTACATGTGTACTCATGCTGGAATGATTGGAACGTCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATTGGATTCTCACCAGATGGCTTGCAAAATTTGATCAATTCGCTGGCTTATGTGAACCAAAGGAGCACTACTGCAACCTCAATTGTGGCACCTATATGCTATGCCCACCATGCTGCAGCTCAAATGCGACAGTTTCTGAATTTCGATGAGTTATCAGAAGCATCTTTGAGTCCTGATTCTGAGGGAAACATCCCAATTCCAGAACTTCCAAGGTTGCATACAGATGTCAACACCTCTATGTTCTTCTGTTGA 2706 0.4076 MVSVSGFEEVVEPPALPPSPPDVLPDMETEQIALPTYSIISRPGVGTTGKRIALLVNLFKVAADATDATFFQYSVTITSEDKRVIENKGIGRKLIDKLHQTYSSELGGKSFVYDGDRTLYTVGPLPDNKFEFTVLLEESFAKHSTECPGADGSPHGENKRSKRSFPPKAFTVEISFSAKIPLQSIALSLKGIESYANSQDALRVLDTILRQRAANRGCLLVRQSFFHDDSKNFIDVGGGVTGVRGFHSSFRLTQGGLSLNMDVSTTMIVKPGPVIDFLLTNQSVREPRYIDWAKAKRMLKNLRVRATHRNQEFKISGLSEKPCIQQLFSLKMKNGEDSNAEKTVDVTVYEYFAKHRGIELTSSAYLPCLDVGKPNRPIFLPLELCSLLPLQRYTKALSPVQRASLVEKSRQKPQERIKILTNAIGNSCYDDDAVLTACGISIDKQFTPVEGRVLETPKLKVGKNEDCFPNNGRWNFKNKTLLQPSHIEYWAVVNFSAQCDTSYITRELIKCGMSKGINIERPFTLIEEEAQMRKSNPVARVEKMFELLISKLTKRPKLILCVLPERKNCNIYGPWKRKCLSEIGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGNLTLLKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDALFKPLGDGIDDGIIRELLLDFYHTSNHKPTQIILFRDGVSESQFQQVLNIELNQIIKAYKYIDGVDVPKFTVIVAQKNHHIKLFQANALENVPPGTVVDTKIVHPRNYDFYMCTHAGMIGTSRPVHYHVLLDEIGFSPDGLQNLINSLAYVNQRSTTATSIVAPICYAHHAAAQMRQFLNFDELSEASLSPDSEGNIPIPELPRLHTDVNTSMFFC* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4552 901 Pfam Piwi domain 558 864 IPR003165 GO:0003676
Tpr2g4552 901 ProSiteProfiles PAZ domain profile. 296 389 IPR003100 GO:0005515
Tpr2g4552 901 SUPERFAMILY PAZ domain 266 427 IPR036085 GO:0005515
Tpr2g4552 901 Pfam N-terminal domain of argonaute 50 209 IPR032474 -
Tpr2g4552 901 SUPERFAMILY Ribonuclease H-like 550 863 IPR012337 -
Tpr2g4552 901 SMART DUF1785_2 219 271 IPR014811 -
Tpr2g4552 901 Gene3D - 627 901 IPR036397 GO:0003676
Tpr2g4552 901 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 33 900 - -
Tpr2g4552 901 CDD Piwi_ago-like 434 864 IPR045246 -
Tpr2g4552 901 Pfam Argonaute linker 1 domain 221 269 IPR014811 -
Tpr2g4552 901 Gene3D paz domain 265 393 - -
Tpr2g4552 901 Gene3D - 453 619 - -
Tpr2g4552 901 SMART PAZ_2_a_3 272 411 IPR003100 GO:0005515
Tpr2g4552 901 CDD PAZ_argonaute_like 271 388 - -
Tpr2g4552 901 Pfam PAZ domain 275 405 IPR003100 GO:0005515
Tpr2g4552 901 Pfam Argonaute linker 2 domain 415 460 IPR032472 -
Tpr2g4552 901 PANTHER PROTEIN ARGONAUTE 6 33 900 - -
Tpr2g4552 901 SMART Piwi_a_2 558 865 IPR003165 GO:0003676
Tpr2g4552 901 ProSiteProfiles Piwi domain profile. 558 865 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4552 Tpr-Chr2 50318921 50328850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4552 42 901 Eukaryotic Initiation Factors Gene Family AT1G48410 36.123 8.28e-162 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4552 K11593 - gmx:100778875 1373.99