Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4522 ATGATCGTAACCGGAGAGAAGCCACTAAAGCGTTTGAAGAGAAAAGCAACCGCCGATTTCCACAACTTTCCACCGTCAGAAGATAACTTCTCCGGCGAACCATTCCGAACGAATGTACGTTCGTTTCTGACGAAACACGCGCTACTTCCTCCTCCATCGGCACTTTTCCCTCACTTGCTGACGTGGCAGATCATGTTCCGAGTCGGTGGTGGTTTGAATGAGACGGAGGATGGATCGGAACCGGTGGTTTGTCTCGATGTTGTTGAAGAGGATGTGGCTAGATCTAGATCCGTGTACTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGGCACCCGGTCTGCGGGAAACGTTACCATTTTATCATAAAGGCTGATGGGAGCTCTATTGGTGGGTATCACAAGCCATGCATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAGTGCAAGTCTTGCAACCATGTGACAAGTACAGATGTTGTTGAAGATTGGGTGTACCAGCAATTGGAGAGCACTACTCATCTTTTACATGGTGTGGTTCATACCAATGGTTATGGGCACCTTCTTCGTGTTAATGGCAGAGAGGGAGGCTCAAGATTTCTCTCTGGCTGCCACATCATGGACTTCTGGGATCGGCTCTGCAAGACACTTGGAGTCAGAAATGTTAGTGTGATGGATGTTTCAAAGAAATATGGGCTGGAGTACCGTCTGATCCATGCCATCATGAGGGGGCATTCCTGGTATGGTGAATGGGGTTATCAATTTGGCTCTGGTAGCTATGGTCTCACACAGGAAGCATATAAGATTGCTGTTGAAAGCCTGTCTAACTTACCCTTATCCATCTTCCTCTCCCATGACCAGAAGCCCCACTCTCGTGTGCAGGGCATCATTTCACATTACCAGTCTTTGTCAGAACATCAGCTTGTAAATATAAGAGACCTCTTCTGTCTTCTGATGAGTTTGATTCACGATGTTGCCAAGACTTCATCAAAGGTTGGTGGCATTACCGGCAAGAAGCGCAGCTTTGATGCCACCGGAGCGTCATGTTCTTGGGAGGAGAGTGATGTGGTACGTGTTGAGGAAGCCATTCTCAAAGTGCTGCGTGCTGTGTCTCGGTCCAATTGGGTGAGCTGGCGTGCTCTTAGGGGTTCTGTCTACAAGGTTGCCTCTGCAGAGCTGCTTGATTACTGCCTTGGAGAACTGGGAGGAAAAGTGGTATTGGGTTCAATGATTGTTAATACCCGATCCAATCCTGAGACCGGAATTTTTGAGTTCAGACTCGAGGGTGCAAACAGTTCTTGCGACGGAAAAACATCAAACAATTATTCTTCAAGCTCAAAGAGTCTATCTAAAGAGAACCTCCTATATGACCTGAAATATTTGTATGGGTATTTGCTTAACTCTCAGATGATGCAGAACTATGACCCCCAGGGAAAAAGGACTCCTGTAATGAGCTCAGCTCAGAAACTTCTGAACTGCAAGCAGTTAGTAAAAAATTATAGTCCTGAGATGTTGCCAATTACAGATTTGTATAAAATACGCCTCTCATGTCAAGTGGAACTTATGGACGAATCTGAAAATCCCACAATTCCAACAGAACTGGTTGTCCTACCAATAAATGCAACAGTGTCTGACCTTAAAATCGAAGCAGCAAATGCTTTTCAAGATGTATATCTCATGTTCAGAAGATTTGTAGTCGATGAGCTAGTTGGCTATAGCAGTGTAGATGATTCCACTCAGGTCAAGCTCTTGTTAGGATCAGCAGAAGCAGTTTGTGTCCGCGGAGAATGCATTGGAAAGAATGGATTGAGCATGTTTCGAATGGAACGGGGAATCGAGAGGTGGACTGTGGATTGCAGCTGTGGGGCTAAGGATGATGATGGGGAGAGAATGCTGGCTTGTGATAAATGTGGAGTGTGGCGGCATACTATATGTTCCGACATTCATGATATACAACCTGTTCCTACTCATTTTATTTGTCTAAAATGCCAAAACTCTGACTTGAAACCTAAATCAGTTGGGAATTGCAAAGAAGAAACTCTGACTAACATTAGTGGTAGTAGCAGTTGCTTTAAAAAGGGGTTACCTGTGCCTTCTGATGTTCACTAA 2112 0.4531 MIVTGEKPLKRLKRKATADFHNFPPSEDNFSGEPFRTNVRSFLTKHALLPPPSALFPHLLTWQIMFRVGGGLNETEDGSEPVVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTSTDVVEDWVYQQLESTTHLLHGVVHTNGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRNVSVMDVSKKYGLEYRLIHAIMRGHSWYGEWGYQFGSGSYGLTQEAYKIAVESLSNLPLSIFLSHDQKPHSRVQGIISHYQSLSEHQLVNIRDLFCLLMSLIHDVAKTSSKVGGITGKKRSFDATGASCSWEESDVVRVEEAILKVLRAVSRSNWVSWRALRGSVYKVASAELLDYCLGELGGKVVLGSMIVNTRSNPETGIFEFRLEGANSSCDGKTSNNYSSSSKSLSKENLLYDLKYLYGYLLNSQMMQNYDPQGKRTPVMSSAQKLLNCKQLVKNYSPEMLPITDLYKIRLSCQVELMDESENPTIPTELVVLPINATVSDLKIEAANAFQDVYLMFRRFVVDELVGYSSVDDSTQVKLLLGSAEAVCVRGECIGKNGLSMFRMERGIERWTVDCSCGAKDDDGERMLACDKCGVWRHTICSDIHDIQPVPTHFICLKCQNSDLKPKSVGNCKEETLTNISGSSSCFKKGLPVPSDVH* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4522 703 PANTHER OS01G0877500 PROTEIN 2 672 - -
Tpr2g4522 703 SMART PHD_3 619 665 IPR001965 -
Tpr2g4522 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 670 IPR013083 -
Tpr2g4522 703 SUPERFAMILY FYVE/PHD zinc finger 612 668 IPR011011 -
Tpr2g4522 703 Pfam PHD-finger 620 666 IPR019787 -
Tpr2g4522 703 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 2 672 - -
Tpr2g4522 703 CDD PHD_MMD1_like 619 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4522 Tpr-Chr2 49906150 49911834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4522 31 664 PHD Transcription Factor Family AT5G22260 28.741 4.80e-82 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr2g4522 PHD 1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4522 - - gmx:100818189 1043.11