Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4520 ATGAAAAAGAATTCTGAGCAGAATCGTTTTGGAGCTGTATTCAACAAGCTGTTGAGCCAGATTGGGGAACCTGTTGACTTTGAGCTTCCAGAATGGGTTAAGATCAGAACAACACAGTACACCCATATTAAGCGCAATATATATCTCACCAAGAAGAACAAGAGAAAGTTTGATCATGGCATATTCTGTTCCTGCGAACCATCATCTGAATCTACTGGTGTATGTGGAAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGCCTGCAAATGTGGGATCTCGTGTCTCAACAAAGCTTTTCAGAATCGTCCTGTGAAAAAGATGAAGTTGGTTAAGACTGAAAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAATTTGTCATTGAATATGTTGGAGAAGTCATCGATGACAAAACATGCGAACAGAGGCTTTGGAATATGAAAGATCGTGGGGAAACAAACTTTTACTTATGTGAAATCACTCGAGATATGGTGATAGATGCAACTAATAAGGGAAACAAATCAAGATATATCAATCATAGCTGCTGCCCGAATACTGAGATGCAGAAATGGATAATAGATGGCGAAACCAGAATTGGCATATTTGCAACTCGTGACATACAGAAGGGCGAGCATCTGACTTATGACTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGCGCTGTTCAGTGTAGGCGTAAACTGGGTGCGCGCCCTACCAAGCCTAAAGTGTCTTCAGATGCTGCAGTAAAATTAGTTGCATATCAGCTTTGTCAGAATGGAGGCATGCAAGGTGTGCATATTGGAAGTTCTCGGATTTTTGATCAATCAAAATGCTTACACAATTGTGTTGATGAAGTAATCATGATAAAACAACTTGGAAATGTGAGATTTGGGATTATTAAATGGTTTGACGAATATTCCCGAAAACACAAGATCATGTTTGAGGATGGTGGTGTTGAAATTTGTGACATGTCAAAAGAAGATTGGGAACTAGTGAGATTGTGA 1044 0.4033 MKKNSEQNRFGAVFNKLLSQIGEPVDFELPEWVKIRTTQYTHIKRNIYLTKKNKRKFDHGIFCSCEPSSESTGVCGRDCHCGMLLSSCSSACKCGISCLNKAFQNRPVKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEQRLWNMKDRGETNFYLCEITRDMVIDATNKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAVQCRRKLGARPTKPKVSSDAAVKLVAYQLCQNGGMQGVHIGSSRIFDQSKCLHNCVDEVIMIKQLGNVRFGIIKWFDEYSRKHKIMFEDGGVEICDMSKEDWELVRL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4520 347 SMART set_7 109 232 IPR001214 GO:0005515
Tpr2g4520 347 CDD SET_ASHR3-like 110 248 - -
Tpr2g4520 347 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 34 290 IPR025787 -
Tpr2g4520 347 ProSiteProfiles Post-SET domain profile. 232 248 IPR003616 -
Tpr2g4520 347 Pfam SET domain 120 225 IPR001214 GO:0005515
Tpr2g4520 347 ProSiteProfiles AWS domain profile. 58 107 IPR006560 GO:0005634|GO:0018024
Tpr2g4520 347 ProSiteProfiles SET domain profile. 109 226 IPR001214 GO:0005515
Tpr2g4520 347 SMART PostSET_3 232 248 IPR003616 -
Tpr2g4520 347 SUPERFAMILY SET domain 36 244 IPR046341 -
Tpr2g4520 347 PANTHER SET DOMAIN PROTEINS 7 345 - -
Tpr2g4520 347 SMART shorttest3 58 108 IPR006560 GO:0005634|GO:0018024
Tpr2g4520 347 Gene3D SET domain 25 264 IPR046341 -
Tpr2g4520 347 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3 7 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4520 Tpr-Chr2 49881211 49891687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4520 82 244 C2H2 Transcription Factor Family AT2G23740 34.973 5.93e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr2g4520 SET 6.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4520 - - gmx:100808183 598.586