Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4483 ATGGGGTGGGGTCACCTTCGAAGTCACGGCTCAGATTCGGGTAACAACGCCGATGCAGGTCCGAGCACCAGTATGTCGGTACCACGGCAGTTTCCTCCGGCTGCTCAACCGGAAATGATGCGAGCAGCTGAAAAAGACGATCAATACACCTCTTTCGTTTACGAAGCTTGTCGCGACGCCTTCCGCCACCTCTTCGGTACTAGAGTTGCAGTGGCTTATCAAGACGAGACGAAACTTTTAGGGCAAATGCTTTACTATGTTCTCACAACCGGCTCTGGACAACAAACACTTGGTGAAGAATACTGTGATATCACTCAGGTTGCAGGAACTTATGGGCTTCCTCCTACACCAGCCAGGCGTGCTTTGTTCATTGTATACCAGTCAGCGATTCCATACATTGCAGAACGAATTAGAATTGCTTCCCGGGGAATTATCCTTGCTGACTATGAGTCTGCTGAGAGTTATTATGGTGAAAATGCCCGTGGGAGTAGTAGTTCTCGGGTTTATGCCACGAGTGAACTTTCTACTTCGTCTACCTCGGGGCAGTCTACTTCAACTCTGACGAGGTTGAAGGAGAAACTCGGTGGATTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGTTGCTTCTGCGTGCTAACCTCATGTTATTTTACTTTGAAGGTCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAAGCGTCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTCTTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTGCGTCGAAGAAATTTTACATCAATTGCTGGTTCAGTTCATCAGGCATCCTTTGCAACCGACCATACATCAGCAGGACATGGTTTCCCTGTTCTAAATGAAGAAGGTAATTTGGCATATCCAGAAGCTGATAACGGAAGTTGGGTCTCTGGATCTTCATCTTCTGAGCATCATGCATCTAGTGGGGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCTTGCGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAACCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTCTAGTTTGTATTTATCATTCAGACTTCTAG 1191 0.4593 MGWGHLRSHGSDSGNNADAGPSTSMSVPRQFPPAAQPEMMRAAEKDDQYTSFVYEACRDAFRHLFGTRVAVAYQDETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYIAERIRIASRGIILADYESAESYYGENARGSSSSRVYATSELSTSSTSGQSTSTLTRLKEKLGGFWLHMVQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFTSIAGSVHQASFATDHTSAGHGFPVLNEEGNLAYPEADNGSWVSGSSSSEHHASSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4483 396 MobiDBLite consensus disorder prediction 1 40 - -
Tpr2g4483 396 PANTHER PEROXISOME BIOGENESIS FACTOR 10 28 393 - -
Tpr2g4483 396 Pfam Zinc finger, C3HC4 type (RING finger) 341 385 - -
Tpr2g4483 396 ProSiteProfiles Zinc finger RING-type profile. 342 380 IPR001841 -
Tpr2g4483 396 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 28 393 - -
Tpr2g4483 396 SUPERFAMILY RING/U-box 341 385 - -
Tpr2g4483 396 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Tpr2g4483 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 393 IPR013083 -
Tpr2g4483 396 SMART ring_2 342 379 IPR001841 -
Tpr2g4483 396 MobiDBLite consensus disorder prediction 9 30 - -
Tpr2g4483 396 CDD RING-HC_PEX10 341 380 - -
Tpr2g4483 396 Pfam Pex2 / Pex12 amino terminal region 46 279 IPR006845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4483 Tpr-Chr2 49327956 49342109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4483 336 392 C3H Transcription Factor Family AT4G28270 34.247 2.15e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4483 K13346 - gmx:100783914 659.062