Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4468 ATGCCTTCACTATCTATAACTAACGACGCCGTTTCAATGGAAAGCCCTAAGCAAAAATCACTGAAGAAGAAGAAGGAAAAGCTTCAAAACGACATCGTTATGGAGGAAGAATCAGCGAAGAAGAGTTCAAAGAAGAGGAAGAAATCTTCAGATGATGATGAAGAAACTAAGAGTGGAACTAGCTCCGATGAAGGTTCTAGAATGAAAGTGAAGAAGGAGAAAAAGAAGAAGAAATCGAAGGTTGAAGATGATGAAGAAGTTGAAGCTGTTGTTGTGAAGAAGGATGATCCTAATGCTGTTTCGAATTTTAGAATTTCGGAACCGTTGAAGATGAAATTGAAGGAAAACGGTATTGAAGCTTTGTTTCCGATTCAAGCTATGACTTTTAATACTATTCTTGATGGTGCTGATTTGGTTGGTCGTGCTCGTACTGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCATTGACAAATGGTCCAGCTAAATCGGTTAGAAAAACTGGTTATGGAAGGGTCCCAAGTGTCCTCGTGCTTTTACCTACTAGGGAATTGGCCAATCAGGTGTATGCCGACTTTGAACTTTATGGTTCGTCCCTGGGATTGGCTGCTTGCGCTGTATATGGTGGAGCTCCATATGGACCTCAGGAGAATAAGCTCAGGAGAGGTGTTGATATCGTTATTGGAACACCAGGTCGTATTAAGGATCATATTGAGAAGGGAAATATTGACCTGAGCCACCTAAAGTTCCGTGTCCTTGATGAGGCTGATGAGATGTTGAGGATGGGTTTTGTTGATGATGTTGAACTCATTCTAGGCAAGGTACAAGATGTTACTAAAGTACAGACCCTTCTTTTCAGTGCTACGTTGCCAAGCTGGGTTAAGCAAATTTCTACAAAATTTCTGAAAGCAGATAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTATTCTTCCATGTAATCATACTGCTATGGCACAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTGCCGAGAAAAAGGAGTCGGCTTCAGAGCTTGCTGGATTGTTGCCTGGTGCAAGAGCTCTCCATGGTGATATACAGCAGTCACAACGTGAGGTTACATTGAAAGCTTTTAGGTCTGGGAAATTCATGACATTGGTGGCAACCAATGTGGCGGCTAGGGGTCTAGACATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCCCGGGATGTAGAAGCATATATACATCGATCTGGGCGGACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCCAGAAGGTCGAATATAGCTAAAATAGAAAGAGAAGCAGGTATAAAATTTGAACACGTATCTGCTCCTCAGCCTGATGAAATTGCCAAAGCTATGGGTGGGGATGCTGCTTCAATGATTACTGAAGTGTCTGATAGTGTAATTCCTGCATTCAAATCTGCTGCTGAGGAACTTTTGAAGAACTCTGGTTTATCAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGATGTAAAGAAAAGATCACTACTGACTTCAATGGAGAATTATGTTACATTAATTCTTGAGGGAGGAAAACCTATGTTCACCCCATCCTTTGCATTTGGAACCCTGAGGAGATTTGTACCTGAGGATAAGGTTGACGCAGTACAAGGTCTTGCTCTAACTGCAGATGGACAGGGTGCTGTTTTTGATGTACCAGCCAAGGACTTGGATGTATTTCTTAACAGTCAAAAGAATGCTGTTAATGTAAGCCTAAAGATTGCTAAGGAATTGCCAAGTTTACAACAAAGAGAGGACAATAGACCAAGCAGATATGGTGGTGGCCGTGGGTTTTCAGGTGGAAGAAACGGAGGGTTTAGGTTTGGTGGAAGAAGTGGTGGTGGCGGAAGAGGTTTTGGAGGAGGCAGAGGAGGTGGAAAGAGATGGTAA 2025 0.4252 MPSLSITNDAVSMESPKQKSLKKKKEKLQNDIVMEEESAKKSSKKRKKSSDDDEETKSGTSSDEGSRMKVKKEKKKKKSKVEDDEEVEAVVVKKDDPNAVSNFRISEPLKMKLKENGIEALFPIQAMTFNTILDGADLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVLVLLPTRELANQVYADFELYGSSLGLAACAVYGGAPYGPQENKLRRGVDIVIGTPGRIKDHIEKGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTKFLKADKKTADLVGNEKMKASTNVRHIILPCNHTAMAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREVTLKAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIAKIEREAGIKFEHVSAPQPDEIAKAMGGDAASMITEVSDSVIPAFKSAAEELLKNSGLSAVELLAKALAKAVGYTDVKKRSLLTSMENYVTLILEGGKPMFTPSFAFGTLRRFVPEDKVDAVQGLALTADGQGAVFDVPAKDLDVFLNSQKNAVNVSLKIAKELPSLQQREDNRPSRYGGGRGFSGGRNGGFRFGGRSGGGGRGFGGGRGGGKRW* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4468 674 Gene3D - 549 622 - -
Tpr2g4468 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 456 IPR027417 -
Tpr2g4468 674 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 30 660 - -
Tpr2g4468 674 MobiDBLite consensus disorder prediction 1 15 - -
Tpr2g4468 674 MobiDBLite consensus disorder prediction 625 674 - -
Tpr2g4468 674 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 311 IPR014001 -
Tpr2g4468 674 Pfam DEAD/DEAH box helicase 122 299 IPR011545 GO:0003676|GO:0005524
Tpr2g4468 674 SMART ultradead3 117 329 IPR014001 -
Tpr2g4468 674 CDD GUCT_RH7_like 539 624 - -
Tpr2g4468 674 Pfam GUCT (NUC152) domain 532 627 IPR012562 GO:0003723|GO:0004386|GO:0005524
Tpr2g4468 674 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 482 IPR001650 -
Tpr2g4468 674 MobiDBLite consensus disorder prediction 1 87 - -
Tpr2g4468 674 Gene3D - 322 548 IPR027417 -
Tpr2g4468 674 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 30 660 - -
Tpr2g4468 674 MobiDBLite consensus disorder prediction 16 70 - -
Tpr2g4468 674 SMART helicmild6 366 443 IPR001650 -
Tpr2g4468 674 Coils Coil 18 45 - -
Tpr2g4468 674 CDD DEADc 109 306 - -
Tpr2g4468 674 CDD SF2_C_DEAD 326 452 - -
Tpr2g4468 674 Gene3D - 38 311 IPR027417 -
Tpr2g4468 674 Pfam Helicase conserved C-terminal domain 345 443 IPR001650 -
Tpr2g4468 674 SUPERFAMILY RNA-binding domain, RBD 537 618 IPR035979 GO:0003676
Tpr2g4468 674 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 255 263 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4468 Tpr-Chr2 49107350 49112083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4468 105 481 Eukaryotic Initiation Factors Gene Family AT3G19760 30.227 1.79e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4468 K16911 - gmx:100805921 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4468 2 49107350 49112083 Tpr2g4468 2 49107350 49112083 ECH