Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4425 ATGGAAGATGTCAAGAAATGGATGCATAAAGAGACAGAAAAGCAAAGAAGGCAAGAGATGGCCAACCTCTGCACATCCCTTAGATCTCTTCTTCCTTTAGAGTATATTAAGGGAAAGCGCTCAATTTCTGATCATGTGAATGAAGCTATCAATTATATCAACCACCTACAAAACAATGTGAAACAATTACAAGATAAGAAAGAAGATTTAATGAAGGTGTCTAATTTGAATAATATCCACCACCAAAATGGCTCTACTACTAGTACCAATCTTCAACCCTTTGTTATTGTTCAACCTTTCCCTGGAGGACTTGAGATTGTGTGCAGTTACACCTCCAAGACATGTTTGTTTCCTTTGTCAAGAGTGCTAGATATGCTGCTTAAAGAAGGGCTTAATGTGATAAGTAGTAATTCGAGCAAAATAGATGGAAGATTCATATACACTATACGATCTGAGGATCCAATAATGTCAGGGATTGATTACTCTCAACTGCAAAGAAAGCTTACGGATGCAATATTATCATCATCAAGTTTACAAGAGAGTTCATCTGAACCTGGAATTAACCATATCTTGAGATAA 579 0.3644 MEDVKKWMHKETEKQRRQEMANLCTSLRSLLPLEYIKGKRSISDHVNEAINYINHLQNNVKQLQDKKEDLMKVSNLNNIHHQNGSTTSTNLQPFVIVQPFPGGLEIVCSYTSKTCLFPLSRVLDMLLKEGLNVISSNSSKIDGRFIYTIRSEDPIMSGIDYSQLQRKLTDAILSSSSLQESSSEPGINHILR* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4425 192 SMART finulus 10 62 IPR011598 GO:0046983
Tpr2g4425 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Tpr2g4425 192 Coils Coil 46 73 - -
Tpr2g4425 192 CDD bHLH_AtORG2_like 5 78 - -
Tpr2g4425 192 Gene3D - 1 85 IPR036638 GO:0046983
Tpr2g4425 192 PANTHER TRANSCRIPTION FACTOR 1 180 - -
Tpr2g4425 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Tpr2g4425 192 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Tpr2g4425 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 180 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4425 Tpr-Chr2 48490457 48493532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4425 3 168 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 43.931 5.86e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr2g4425 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4425 - - ccaj:109791323 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4425 2 48490457 48493532 Tpr2g4425 2 48490457 48493532 ECH
Tpr2g4425 2 48490457 48493532 Tpr1g0683 1 5770929 5772414 PCT