Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4418 ATGGGAAGAGGGAGAGTAGTTTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGGAGTGGATTGTTGAAGAAAGCTTTTGAGCTTTGTGTGCTATGTGATGCTGAAGTAGCACTTATCATCTTTTCAAGCCGTGGCAAGCTTTTTCAATACAGCAGCACTGATATCAACAAAATCATTGAAAGGTATCGCCAATGTCGTTACAGCAAGTTACAAGCTGAAAACTTAGGACACAATGACTCACAGAATTTATACCAGGAGTACTTGAAACTAAAGGCAAGATATGAATCTCTTGACCGAAAGCAGAGGCATATTTATGGGGAAGACCTTGAGGAACTTAGCATGAAAGAATTGGAGAGCCTTGAGGAACAGCTAGACATAACGCTCACACAAGCTCGACAACTACAAATAAAGAAGCTATCAGCACGAGCAGAGGAACTACGTGAAAAAGTCCATAACTTAGAGGAGCTTAACAAAACATTGGAGCCTAAGCTGGTTTTTTATACCATGAAGCTACTTCAAAGGGGAAAGTAA 552 0.3986 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYSKLQAENLGHNDSQNLYQEYLKLKARYESLDRKQRHIYGEDLEELSMKELESLEEQLDITLTQARQLQIKKLSARAEELREKVHNLEELNKTLEPKLVFYTMKLLQRGK* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4418 183 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 174 - -
Tpr2g4418 183 Coils Coil 121 170 - -
Tpr2g4418 183 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tpr2g4418 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g4418 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g4418 183 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr2g4418 183 Coils Coil 87 107 - -
Tpr2g4418 183 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g4418 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr2g4418 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g4418 183 PANTHER MADS BOX PROTEIN 1 174 - -
Tpr2g4418 183 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g4418 183 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Tpr2g4418 183 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g4418 183 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4418 Tpr-Chr2 48339710 48345146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4418 1 171 MADS-box Gene Family AT5G15800 55.233 5.15e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g4418 K-box 1.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4418 K09264 - gmx:100779279 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4418 2 48339710 48345146 Tpr2g4418 2 48339710 48345146 ECH