Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4408 ATGCAAGAGTCAGAAGAAGAAAATCATGACCTTCCTCAAAAGTCAAAGCCACTAGATGAAAATGGATTTTCCATGAATTTTGATATTGACTTTGAAAATTCATGGCCTTTGGATCATATATCTAACACTATGTATCCTTTTCTTTTATCCACTACCTCTCAACAACAACACTTTTCTCCTATTTGGACTTTTTCTGATGTTGAAGATGACAGCATTGAAGCTTCAGGTAACAACACAAAGATAGTAACCGAAAATCGAGTCGAAAATGACGACAAGAAAAAACATGTGACACCCCAACATGTAGATGCACTTCCACCTTTACAAAATCCACATGGTTATTGTCTAATCAAGGAAAGAATGACACAAGCTCTTAGGCAATTCAAAGAGTGGACTGAACAGAATGTTCTAGCTCAAGTTTGGGCGCCGGTGAGGAACGGAAATCGGTATAAACTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACACAGTAATGGACTTCATCAATATAGAACAGTTTCTTTGATGTATATGTTTTCTGTTGATGGAGAAAACGATGAAATTTTAGGGCTTCCTGGAAGAGTTTTTCAGCAGAAGTTACCAGAATGGACTCCTAATGTTCAGTACTATTCTAGTAAAGAATATTCAAGGCTAAATCATGCTTTACATTACAATGTTCGTGGAACTTTGGCATTGCCGGTGTTTGAACCTCCAGGGCAATCGTGTGTTGCTGTGTTGGAATTGATTATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAGATTTTGGAGTATCCATACAGTCAGATTTGTAATGAAGACCGGCAGAATGCATTATCCGAGATTTTGGAGATATTGACAGTGGTGTGCGAAACTCATAATTTACCTTTGGCACAAACTTGGGTTCCTTGTAGGCATAGAAGTGTTTTGGCTCATGGTGGCGGTCTTAAGAAAAGTTGCTCAAGTTTTGACGGTTATTGTATGGGACAAGTTTGCATGTCTATTACCGAGGTAGCGTTCTATGTAATAGACTCTCATACATGGGGTTTCCATGATGCATGTGTTGAGCATCACTTACAACAAGGTCAAGGAGTTGCCGGTAGAGCTTTTTTGTCACAGAATATGTGTTTCTGCGAAAACATTACTCAATTCTGCAAAACCGATTACCCTTTAGTACATTATGCTCTCATGTTTGATTTAACAAGCTGTTTTTCAATCTGTTTACAAAGTTTTCATACCGGAAATGATGAATATGTACTAGAGTTTTTTCTGCCGCCTAGTATCAGCGAATTTTCTGAACATAAGGCTTTGTTGGGATCCATATTAGCAATGATGAAACAAAATTTCCAAAGTCTTAAGGTTGCTTCTGGGTTTGAACTTGGGGAGGATGGATCGATTGAAATTGTTGAAATATTAAATGGAAGAGTTCATTTGAGGCTTGAATCTGTTCCGATTATTCAATCTGAAAAATTATCAACTAGACATGATGATGCCTCACCGAATATGGACGAGGGAGTGCTTCCACTAGATCCATTACAACATAAAATAATCACGAGCTTTGATGACATAAATGATAGAGGGATTCTTGATGATAATTCCGGTGGAAGCATAGCTCGGATCTCTTCATTGGAGACAAAAACCAAAAAGAAAACCTCCCAAAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGATGTGTTGCAAAACTATTTCAGCGGGAGCCTAAAGGATGCTGCAAAGAGCCTCGGAGTTTGTCCTACTACGATGAAGCGAATCTGCAGGCAGCATGGAATATCCCGTTGGCCATCTCGAAAGATAAAAAAGGTCAACCGTTCCTTGTCAAAGCTCAAGTGCGTTATTGAATCTGTCCATGGTGTTGAAGGAGCATTTGGTTTGAATTCTCCAACTACAAGTCCACTCCATATTGCTTCAAACAAGTTAGAACACCAAACCTCATTGAGCATAATGCCATCAGAACCTAAGATGAACGAAAATGATTTTGATGCTTCGAAGTCACAACCTCAAGAACCATTTATAGAAATGCTAATTGAAGGTGCAGATAGTTGTTCTAAAGACTTGAAAAATATGTGTCCTTTAGCAGATGCTGTTTTGGAGGATCGTGTCCTAGAAGCTTCAAGGACTAATCCTCCATGTTTCGATTACGCTCCTTTAGCTCAGAAGGAGATAAAGATTGTGACTATTAAGGCAACATATAGAGATGATATCATAAGGTTTAGGGTGTCTTTGAACTGTGGCATTGTGGAATTGAGAGAAGAAATTTCCAAAAGATTGAAACTAGAGGTAGGGACATTTGATATCAAGTATTTGGATGATGATCTAGAGTGGATTTTGGTGGCATGTGATGCTGACTTGCAGGAGTGCATTGATATTTTAACATCATCAGGCAGCAATACTATCAGGCTTGTTGTGCATGATATTGTGTCCATTCTTGGAAGCTCTGTTGAGAGCTCAGAGTAG 2529 0.3887 MQESEEENHDLPQKSKPLDENGFSMNFDIDFENSWPLDHISNTMYPFLLSTTSQQQHFSPIWTFSDVEDDSIEASGNNTKIVTENRVENDDKKKHVTPQHVDALPPLQNPHGYCLIKERMTQALRQFKEWTEQNVLAQVWAPVRNGNRYKLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEILGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEYPYSQICNEDRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGYCMGQVCMSITEVAFYVIDSHTWGFHDACVEHHLQQGQGVAGRAFLSQNMCFCENITQFCKTDYPLVHYALMFDLTSCFSICLQSFHTGNDEYVLEFFLPPSISEFSEHKALLGSILAMMKQNFQSLKVASGFELGEDGSIEIVEILNGRVHLRLESVPIIQSEKLSTRHDDASPNMDEGVLPLDPLQHKIITSFDDINDRGILDDNSGGSIARISSLETKTKKKTSQRKRGKAEKSISLDVLQNYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGVEGAFGLNSPTTSPLHIASNKLEHQTSLSIMPSEPKMNENDFDASKSQPQEPFIEMLIEGADSCSKDLKNMCPLADAVLEDRVLEASRTNPPCFDYAPLAQKEIKIVTIKATYRDDIIRFRVSLNCGIVELREEISKRLKLEVGTFDIKYLDDDLEWILVACDADLQECIDILTSSGSNTIRLVVHDIVSILGSSVESSE* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4408 842 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 689 841 - -
Tpr2g4408 842 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 688 - -
Tpr2g4408 842 SUPERFAMILY CAD & PB1 domains 748 833 - -
Tpr2g4408 842 Gene3D - 746 829 - -
Tpr2g4408 842 Pfam PB1 domain 749 829 IPR000270 GO:0005515
Tpr2g4408 842 SMART PB1_new 748 830 IPR000270 GO:0005515
Tpr2g4408 842 CDD PB1_NLP 749 829 IPR034891 -
Tpr2g4408 842 PANTHER PROTEIN NLP8 689 841 IPR045012 GO:0003700
Tpr2g4408 842 PANTHER PROTEIN NLP8 3 688 IPR045012 GO:0003700
Tpr2g4408 842 ProSiteProfiles RWP-RK domain profile. 563 646 IPR003035 -
Tpr2g4408 842 Pfam RWP-RK domain 579 626 IPR003035 -
Tpr2g4408 842 ProSiteProfiles PB1 domain profile. 748 830 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4408 Tpr-Chr2 48097522 48103012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4408 171 842 NLP Transcription Factor Family AT1G64530 55.775 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tpr2g4408 PB1 6.3e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4408 - - mtr:MTR_0022s0430 1427.15