Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4398 ATGGAAACCGCAACCACCCTCACCGGACTCCTCCAAGCCGTCGCCGAAAAATTCCCTACCCGACGTGCCATCTCCGTCGCCGGAAAACTCGACCTCACTCACTCTCACCTCAATCAATTAGTTGAATCCGCCGCAAATCATCTCATCTCCGCCGGAATCAAACCCAACGACGTCGTCGCTCTCACCTTCCCTAACACCGTCGAGTACGTAATACTCTTTTTGGCCGTTATTCGAGTACGAGCCACGGCGGCGCCGTTAAATGCGGCTTACACATCAGAAGAATTCGAGTTTTATTTATCAGACTCTGAATCGAAGCTTCTATTAACGCCGTTAGAAGGTAACGAACCGGCTCAAGCCGCAGCTACAAAGCTCAAAATTCAACTCGGCTCGGCTTCGCTTATCAAAACCACTGAAGAAGAAGAAACTAAATTTGCTTTTTCAATCTCGTTGAACAAACCCGAGTCAGAGTCAGATTTAAATTCTGTTAACTCAGTTAACTCGATTTCCGAACTCATTAACGAACCATCCGACGTGGCACTTTTCCTCCACACATCAGGAACAACGAGTCGACCTAAGGGGGTCCCACTGAGTCAACACAACTTAGTTTCGTCTGTTAGAAACATTGAATCGGTTTATCGACTCAATGAGTCTGACTCGACGGTTATCGTGCTTCCGCTTTTCCATGTTCATGGATTAATTGCTGGATTACTGAGTTCACTTGGTGCCGGAGGTGCGGTGGCGTTACCATCGGCGGGAAGATTCTCGGCGTCGACGTTTTGGAAAGATATGATTCAATACAATGCCACGTGGTATACTGCGGTTCCTACTATTCATCAGATTATACTTGATCGTCACTTGAATAGCCCTGAACCGGTTTACCCGAGACTCCGGTTTATCAGAAGCTGTAGCGCTTCCTTGGCACCGGTTATTCTAGGTCGGTTAGAGGAAGCATTTGGGGCACCAGTTTTGGAGGCATATGCTATGACAGAGGCAACTCATTTAATGTCTTCGAATCCTTTGCCACAAGATGGGCCCCACAAAGCTGGGTCAGTTGGGAAACCAGTGGGTCAAGAAATGGCTATATTGGATGAATCGGGTCGGGTTTTAGAGAATGAAGTTAATGGTGAAGTGTGTATTAGAGGAGAAAATGTTACAAAAGGGTATAAGAATAATGTGGAAGCTAATACAGCTGCATTTTTGTTTGGCTGGTTTCATACTGGTGATATTGGTTACTTTGATTCTGATGGGTATTTGCATCTTGTGGGTCGGATTAAAGAGCTCATAAACAGAGGAGGAGAGAAAATATCACCAATAGAAGTGGATGCTGTTCTTCTATCTCATCCTGACGTAGCACAAGCAGTTGCTTTTGGAGTGCCAGATCAGAAATATGGTGAAGAGATACATTGTGCAATCATACCAAGAGAAGGAACTAACATTGATGAGGCAGAGGTGCTAAGATTTTGCAAGAAGAATCTCACATCTTTTAAAGTCCCCAAAAAGGTTTTCATTACTGATTCTTTGCCAAAGACAGCTACCGGCAAGATTTTGCGTCGTCTCGTGGCAGAACATTTTGTCTCTCAAGTTTGA 1587 0.4512 METATTLTGLLQAVAEKFPTRRAISVAGKLDLTHSHLNQLVESAANHLISAGIKPNDVVALTFPNTVEYVILFLAVIRVRATAAPLNAAYTSEEFEFYLSDSESKLLLTPLEGNEPAQAAATKLKIQLGSASLIKTTEEEETKFAFSISLNKPESESDLNSVNSVNSISELINEPSDVALFLHTSGTTSRPKGVPLSQHNLVSSVRNIESVYRLNESDSTVIVLPLFHVHGLIAGLLSSLGAGGAVALPSAGRFSASTFWKDMIQYNATWYTAVPTIHQIILDRHLNSPEPVYPRLRFIRSCSASLAPVILGRLEEAFGAPVLEAYAMTEATHLMSSNPLPQDGPHKAGSVGKPVGQEMAILDESGRVLENEVNGEVCIRGENVTKGYKNNVEANTAAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDVAQAVAFGVPDQKYGEEIHCAIIPREGTNIDEAEVLRFCKKNLTSFKVPKKVFITDSLPKTATGKILRRLVAEHFVSQV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4398 528 SUPERFAMILY Acetyl-CoA synthetase-like 5 526 - -
Tpr2g4398 528 Pfam AMP-binding enzyme 12 430 IPR000873 -
Tpr2g4398 528 PANTHER ACYL-COA SYNTHETASE 1 528 - -
Tpr2g4398 528 Gene3D - 5 423 IPR042099 -
Tpr2g4398 528 Pfam AMP-binding enzyme C-terminal domain 439 514 IPR025110 -
Tpr2g4398 528 CDD FACL_fum10p_like 19 522 IPR045310 GO:0016874
Tpr2g4398 528 PANTHER OXALATE--COA LIGASE-LIKE 1 528 - -
Tpr2g4398 528 ProSitePatterns Putative AMP-binding domain signature. 181 192 IPR020845 -
Tpr2g4398 528 Gene3D - 424 526 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4398 Tpr-Chr2 47968554 47974415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4398 5 528 Monolignol Biosynthesis Gene Families AT4G05160 29.228 8.72e-57 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4398 K22133 - gmx:100779306 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4398 2 47968554 47974415 Tpr2g4398 2 47968554 47974415 ECH