LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g4398	ATGGAAACCGCAACCACCCTCACCGGACTCCTCCAAGCCGTCGCCGAAAAATTCCCTACCCGACGTGCCATCTCCGTCGCCGGAAAACTCGACCTCACTCACTCTCACCTCAATCAATTAGTTGAATCCGCCGCAAATCATCTCATCTCCGCCGGAATCAAACCCAACGACGTCGTCGCTCTCACCTTCCCTAACACCGTCGAGTACGTAATACTCTTTTTGGCCGTTATTCGAGTACGAGCCACGGCGGCGCCGTTAAATGCGGCTTACACATCAGAAGAATTCGAGTTTTATTTATCAGACTCTGAATCGAAGCTTCTATTAACGCCGTTAGAAGGTAACGAACCGGCTCAAGCCGCAGCTACAAAGCTCAAAATTCAACTCGGCTCGGCTTCGCTTATCAAAACCACTGAAGAAGAAGAAACTAAATTTGCTTTTTCAATCTCGTTGAACAAACCCGAGTCAGAGTCAGATTTAAATTCTGTTAACTCAGTTAACTCGATTTCCGAACTCATTAACGAACCATCCGACGTGGCACTTTTCCTCCACACATCAGGAACAACGAGTCGACCTAAGGGGGTCCCACTGAGTCAACACAACTTAGTTTCGTCTGTTAGAAACATTGAATCGGTTTATCGACTCAATGAGTCTGACTCGACGGTTATCGTGCTTCCGCTTTTCCATGTTCATGGATTAATTGCTGGATTACTGAGTTCACTTGGTGCCGGAGGTGCGGTGGCGTTACCATCGGCGGGAAGATTCTCGGCGTCGACGTTTTGGAAAGATATGATTCAATACAATGCCACGTGGTATACTGCGGTTCCTACTATTCATCAGATTATACTTGATCGTCACTTGAATAGCCCTGAACCGGTTTACCCGAGACTCCGGTTTATCAGAAGCTGTAGCGCTTCCTTGGCACCGGTTATTCTAGGTCGGTTAGAGGAAGCATTTGGGGCACCAGTTTTGGAGGCATATGCTATGACAGAGGCAACTCATTTAATGTCTTCGAATCCTTTGCCACAAGATGGGCCCCACAAAGCTGGGTCAGTTGGGAAACCAGTGGGTCAAGAAATGGCTATATTGGATGAATCGGGTCGGGTTTTAGAGAATGAAGTTAATGGTGAAGTGTGTATTAGAGGAGAAAATGTTACAAAAGGGTATAAGAATAATGTGGAAGCTAATACAGCTGCATTTTTGTTTGGCTGGTTTCATACTGGTGATATTGGTTACTTTGATTCTGATGGGTATTTGCATCTTGTGGGTCGGATTAAAGAGCTCATAAACAGAGGAGGAGAGAAAATATCACCAATAGAAGTGGATGCTGTTCTTCTATCTCATCCTGACGTAGCACAAGCAGTTGCTTTTGGAGTGCCAGATCAGAAATATGGTGAAGAGATACATTGTGCAATCATACCAAGAGAAGGAACTAACATTGATGAGGCAGAGGTGCTAAGATTTTGCAAGAAGAATCTCACATCTTTTAAAGTCCCCAAAAAGGTTTTCATTACTGATTCTTTGCCAAAGACAGCTACCGGCAAGATTTTGCGTCGTCTCGTGGCAGAACATTTTGTCTCTCAAGTTTGA	1587	0.4512	METATTLTGLLQAVAEKFPTRRAISVAGKLDLTHSHLNQLVESAANHLISAGIKPNDVVALTFPNTVEYVILFLAVIRVRATAAPLNAAYTSEEFEFYLSDSESKLLLTPLEGNEPAQAAATKLKIQLGSASLIKTTEEEETKFAFSISLNKPESESDLNSVNSVNSISELINEPSDVALFLHTSGTTSRPKGVPLSQHNLVSSVRNIESVYRLNESDSTVIVLPLFHVHGLIAGLLSSLGAGGAVALPSAGRFSASTFWKDMIQYNATWYTAVPTIHQIILDRHLNSPEPVYPRLRFIRSCSASLAPVILGRLEEAFGAPVLEAYAMTEATHLMSSNPLPQDGPHKAGSVGKPVGQEMAILDESGRVLENEVNGEVCIRGENVTKGYKNNVEANTAAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDVAQAVAFGVPDQKYGEEIHCAIIPREGTNIDEAEVLRFCKKNLTSFKVPKKVFITDSLPKTATGKILRRLVAEHFVSQV*	529

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr2g4398	528	SUPERFAMILY	Acetyl-CoA synthetase-like	5	526	-	-
Tpr2g4398	528	Pfam	AMP-binding enzyme	12	430	IPR000873	-
Tpr2g4398	528	PANTHER	ACYL-COA SYNTHETASE	1	528	-	-
Tpr2g4398	528	Gene3D	-	5	423	IPR042099	-
Tpr2g4398	528	Pfam	AMP-binding enzyme C-terminal domain	439	514	IPR025110	-
Tpr2g4398	528	CDD	FACL_fum10p_like	19	522	IPR045310	GO:0016874
Tpr2g4398	528	PANTHER	OXALATE--COA LIGASE-LIKE	1	528	-	-
Tpr2g4398	528	ProSitePatterns	Putative AMP-binding domain signature.	181	192	IPR020845	-
Tpr2g4398	528	Gene3D	-	424	526	IPR045851	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g4398	Tpr-Chr2	47968554	47974415	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g4398	5	528	Monolignol Biosynthesis Gene Families	AT4G05160	29.228	8.72e-57	197

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g4398	K22133		-	gmx:100779306	838.18

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g4398	2	47968554	47974415	Tpr2g4398	2	47968554	47974415	ECH

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