Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4368 ATGGTGAAAATTAAAATGGGAAAAACACCATGTTGTGATAAACATGAAGTGAAGAGAGGAGCTTGGACACCTGAAGAAGATGAAATATTAGTTGAGTATATTAACAAAAATGGACATGGAAGTTGGAGAACACTTCCAAAACTAGCAGGTCTCCTTCGATGTGGAAAAAGTTGCCGGCTTCGGTGGATAAATTATCTTCGCCCTGACATTAAGCGTGGACCATTTACTACCGATGAAGAAAACAGAATTATTCATTTTCATACCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAAATTCCAGGACGAACAGACAATGAAATAAAGAACTACTGGAACACACAACTGAAGAAGCGCGTCACTCAGTCGGGAAATTCACTAGCGACACAACAGCACCACTATCTCAGTTCTGATCATATTGTTGTCAAGCCCGAATCTCCTTCGAAACAGCACATGATGCAATGGGAAAGTGACAAAATCGAAGCTGAGGCGAAGTTGCCAACAAGTGAAACACATTCTGATTACTTTCTTCAACTTTGGAATTCTGAGGTTGGAAAGTCATTTAGAATGATCAAAGGAAAAGAGATAATGTGTCAAAGCACTGTCTCAGAGGCATCATCATCCTCAAAATTGGAGTCATGTTCAAACAATGATAGCAGTGCCTTGGTAAACAAGTCACAAGAAGAACAAGGTAGTGACTATAAACCAAAACTTGAAGATGGCATAACAGGTTCAGAGTCAGGCTATTATGAATTTCTCGATTCTTATGATTCTGCACTAAATCGCCTTCTAGACGATGAAATTGGATTCTCAGAACAAAATGAAAGTTTTCTCAATACACTTTTTGGTAGATGTGACTAA 864 0.3935 MVKIKMGKTPCCDKHEVKRGAWTPEEDEILVEYINKNGHGSWRTLPKLAGLLRCGKSCRLRWINYLRPDIKRGPFTTDEENRIIHFHTMLGNRWAAIASQIPGRTDNEIKNYWNTQLKKRVTQSGNSLATQQHHYLSSDHIVVKPESPSKQHMMQWESDKIEAEAKLPTSETHSDYFLQLWNSEVGKSFRMIKGKEIMCQSTVSEASSSSKLESCSNNDSSALVNKSQEEQGSDYKPKLEDGITGSESGYYEFLDSYDSALNRLLDDEIGFSEQNESFLNTLFGRCD* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4368 287 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Tpr2g4368 287 SMART sant 18 68 IPR001005 -
Tpr2g4368 287 SMART sant 71 119 IPR001005 -
Tpr2g4368 287 MobiDBLite consensus disorder prediction 209 230 - -
Tpr2g4368 287 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 6 268 - -
Tpr2g4368 287 Gene3D - 19 71 - -
Tpr2g4368 287 Pfam Myb-like DNA-binding domain 72 116 IPR001005 -
Tpr2g4368 287 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Tpr2g4368 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Tpr2g4368 287 Gene3D - 73 140 - -
Tpr2g4368 287 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 268 - -
Tpr2g4368 287 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Tpr2g4368 287 MobiDBLite consensus disorder prediction 209 241 - -
Tpr2g4368 287 CDD SANT 74 115 IPR001005 -
Tpr2g4368 287 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Tpr2g4368 287 CDD SANT 21 66 IPR001005 -
Tpr2g4368 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4368 Tpr-Chr2 47503446 47506059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4368 6 275 MYB Transcription Factor Family AT3G61250 51.525 2.62e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g4368 Myb_DNA-binding 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4368 K09422 - gmx:100807142 350.903