Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4367 ATGGGAATCCAGGTGGCAGAAAAAGCAAAACCAAAATACAGAAAGGGATTATGGTCCCCTGAAGAAGATAATAAGCTCAGAAATTATATCCTTAAGTATGGTCATAGCTGCTGGAGTTCTGTTCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAGAGTTGCAGATTAAGATGGATTAACTATCTTAGACCAGGATTAAAGAGAGGTATGCTTAGCAAACATGAGGAAGATACAATCATGACACTTCACCACATGTTAGGCAACAAGTGGTCTCAAATAGCACAACAATTACCGGGAAGGACAGACAATGAGATAAAAAATTATTGGCATTCATACTTGAAAAAGAAAGTGGTCAATGCTAAGGAAATAATTGAATCTCATAATCAAATTCAATATGCTAGCTCAAGTTCAGATACAATGGACTCTTTACTCTCTACAAAAAAATGTGCAATTCAAGATCCTAACTATATGTTATTAGAAAACATTGATAAATCAACAACTGCAGCAACACACTCTGATCAATCTATTTCTCAGAATTATAACACTGTCAATGAAGTTTGTCAAAGCTCATTACCAAAACTTTTATTTGCTGAGTGGCTTTCATTGGATCATGTAAATGGTGGAAAATCTTTAAATTCAGATGATTCAATGGTCTTGGGAAATGGATTTGATCAAAATTCTATTTTTCAAGAAAATGTTATGCAAATGCAAGAAGGACAATTTGGTGAAGAGTATCATGATAGTTTAATTCAAAATTTAGAGAATGAGGTTTACTATTCACAGCTTCAAATATCAAATCAAGTGGATGAAAATGAATTGGTTCATTATATGAACAATGATGGAAGATATGTAGTATGA 858 0.3357 MGIQVAEKAKPKYRKGLWSPEEDNKLRNYILKYGHSCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGMLSKHEEDTIMTLHHMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKVVNAKEIIESHNQIQYASSSSDTMDSLLSTKKCAIQDPNYMLLENIDKSTTAATHSDQSISQNYNTVNEVCQSSLPKLLFAEWLSLDHVNGGKSLNSDDSMVLGNGFDQNSIFQENVMQMQEGQFGEEYHDSLIQNLENEVYYSQLQISNQVDENELVHYMNNDGRYVV* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4367 285 CDD SANT 18 62 IPR001005 -
Tpr2g4367 285 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Tpr2g4367 285 SMART sant 67 115 IPR001005 -
Tpr2g4367 285 SMART sant 14 64 IPR001005 -
Tpr2g4367 285 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr2g4367 285 PANTHER MYB TRANSCRIPTION FACTOR 1 277 - -
Tpr2g4367 285 Gene3D - 71 141 - -
Tpr2g4367 285 CDD SANT 72 113 IPR001005 -
Tpr2g4367 285 PANTHER MYB DOMAIN PROTEIN 55 1 277 - -
Tpr2g4367 285 Gene3D - 15 67 - -
Tpr2g4367 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Tpr2g4367 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tpr2g4367 285 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tpr2g4367 285 Pfam Myb-like DNA-binding domain 72 113 IPR001005 -
Tpr2g4367 285 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4367 Tpr-Chr2 47493521 47498375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4367 6 236 MYB Transcription Factor Family AT5G52260 48.085 3.14e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g4367 Myb_DNA-binding 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4367 K09422 - gmx:100803537 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4367 2 47493521 47498375 Tpr2g4367 2 47493521 47498375 ECH