Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4364 ATGGGTGTCAAGAATTTATGGGACATCCTCGAATCTTGCAAGAAAACGGTTCCTCTTCACAATCTCCAGAACAAAAGGGTGTGTGTGGATCTATCATGTTGGATGGTTCAGCTTCAGAATGTGAGTAAATCTCATGCTTGTTTGAAAGAGAAAGTTCATCTTAGGGGACTCTTTCACCGTCTTAGAGCTCTCATTGCTCTTAATTGCACTGTTGTTTTTGTTTCAGATGGATCAATTCCTGCCATTAAATTATCGACTTATAGGCGTCGCTTAAACAATGGAAAGGAGGTAGCCCAAAATGAAACTAACTTACATAAAGTGACATCATTACGGAGAAACATGGGGTCTGAGTTTTCATGCATGATTAAAGAGGCTAAAGTCTTAGGGATGGCTCTTGGTATCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTCTGAATCATTATGTGATGGATGTTTTAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAGTGTACAGAGATATCTGCCTCGGAGACGGCGGATATGTTGTATGTTATGAGATGGCAGACATCGAAAGAAAACTTGGATTTGGACGGGACTCATTGATTGCTCTCTCTTTGCTTCTCGGCAGTGACTATTATCCAGGTGTTCATGGTTTAGGTCCGGAGTCAGCTTGTCAGATAGTCAAATCAATCGGGGACAAATTTATTCTTAAAAAATTTGCGTATGAAGGACTTGGATGGGTTAAAAAAAGTAAAGGAGCTGAAAATAATATAGGAAGGGATGATACCATAGTAGAAGTGATTAATGCTTATTTGAAGCCAAAATGCCATTCAGCAGATTCAGATGTTGTGCTCAGGGCTCTTGCTCAGTATCCATTTGAACGTATTAAACTCCAGCAGATATGCGCTGAATTCTTTGAATGGCCTTCGGAGAGGACAGATGGATATATCCTTCCCGGTATAGCAGAAAGAGATTTACGACGATTTGCCAATTTGCGATTAACTTCATCTGAACTTGGCTTGAACCTTCCTTTACATGAGATCCCTGTGAAGTGTCCTTTGTCAGAAATCATTAAGAGCCGAAGAGCTCAAGGGCGAGAGTGCTATGAGGTTTCTTGGAAAGACATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCTTGTCCGGAGAAGATTTCGGAATTCGAGGAGAGAAAAGCACTGCGGAAGAAACAAAATGTTCAAAAAAGAAGACCAAAGAAAAAGGCCGAAACTACGGCTTCTTTGGCTGAGCTTGATCTAACACTGCAGAATCTGTTGTTAGACAATAACTTGGAAGACAAAACCGACAACAATGTCTCTGAATCTGATTCTTCAGGACGGATATTAGGAGAGATAACCGCTATGGCTGAATCTGATCTAAACACAGAAAACTTGATATTGTCACGCGACAACAGAGAAAATAATGAATGGATTCAGAATATCAGCAACATAACAAGCAATGAAACTGTTCCTAGTATAGATAAAAATGTGGTCATAGATCTTTTGAGCCCTACTCCAATTAAGCAATCACACAATTCTTCGAAGTTTCATCGATCAAGTGACCAAAATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGAGGTTTCACCTGAACACAAGGAGAAAGCTAAAGAGCTGAGATTGTTTTTAGCAAGTATTAGAAATGAAATCCATTGA 1728 0.3941 MGVKNLWDILESCKKTVPLHNLQNKRVCVDLSCWMVQLQNVSKSHACLKEKVHLRGLFHRLRALIALNCTVVFVSDGSIPAIKLSTYRRRLNNGKEVAQNETNLHKVTSLRRNMGSEFSCMIKEAKVLGMALGISCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIERKLGFGRDSLIALSLLLGSDYYPGVHGLGPESACQIVKSIGDKFILKKFAYEGLGWVKKSKGAENNIGRDDTIVEVINAYLKPKCHSADSDVVLRALAQYPFERIKLQQICAEFFEWPSERTDGYILPGIAERDLRRFANLRLTSSELGLNLPLHEIPVKCPLSEIIKSRRAQGRECYEVSWKDMDGLETSIVPADLIESACPEKISEFEERKALRKKQNVQKRRPKKKAETTASLAELDLTLQNLLLDNNLEDKTDNNVSESDSSGRILGEITAMAESDLNTENLILSRDNRENNEWIQNISNITSNETVPSIDKNVVIDLLSPTPIKQSHNSSKFHRSSDQNIEVINLSDSENEVSPEHKEKAKELRLFLASIRNEIH* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4364 575 SMART xpgn3 1 97 IPR006085 GO:0004518
Tpr2g4364 575 CDD PIN_GEN1 2 198 - -
Tpr2g4364 575 CDD H3TH_XPG-like 203 244 - -
Tpr2g4364 575 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Tpr2g4364 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Tpr2g4364 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Tpr2g4364 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Tpr2g4364 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Tpr2g4364 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Tpr2g4364 575 Gene3D - 201 263 - -
Tpr2g4364 575 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Tpr2g4364 575 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 470 IPR006084 -
Tpr2g4364 575 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Tpr2g4364 575 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Tpr2g4364 575 CDD CD_CSD 360 406 - -
Tpr2g4364 575 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Tpr2g4364 575 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 470 - -
Tpr2g4364 575 SUPERFAMILY Chromo domain-like 360 412 IPR016197 -
Tpr2g4364 575 Gene3D - 2 199 - -
Tpr2g4364 575 Gene3D - 358 423 - -
Tpr2g4364 575 SMART xpgineu 130 200 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4364 Tpr-Chr2 47467120 47473547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4364 1 236 Core DNA Replication Machinery Family AT5G26680 25.194 2.22e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4364 K15338 - gmx:100806919 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4364 2 47467120 47473547 Tpr2g4364 2 47467120 47473547 ECH