Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4362 ATGCTTAATTTTCATCTCAAACTCTTCAACTTTACTTCCCTCACAACTCTAATTCCATTCCTCATTCTTCTATTCCTAAACCATGTTGAATCACAAGGATCCATGCAAGCGGTTCCGACCGACATCTCTCAACATAGATGGCAACCTTCCCTTGTAATCACAGGAGGTGCCTTACTTTGTCTACTTCTATTCTTAGGAATCATCTTTTGCTACGTCCGGAATTGTGTCGAATCACGCATCATAATCACTGATTGTCCATGTTCATGTTCACAAGGTATCAACAAAGAACTCCTCAACACTTTTCCTATCCTCTTTTTCTCAACAATCAAGGATCTTAAAACAGATAAAGGACCATTGGAATGTGCAGTTTGTTTAACAGATTTCAAAGAAAATGATACCTTAAGATTACTACCTAAATGCAACCATGTTTTTCACCCTCAATGCATTGATTCATGGTTAGCTTCACATGTTACATGTCCTGTTTGTCGCGCAAATCTTAACCAAGATTCTTGTCAAGTAGCAATGATTATTCCAACTCATTTCAACAATGACCAAACGTGTGAAGAAAGTCCCGAAACCGTGCCCGAAATCACTCTAAAAACCGTACCTGAAATCGCTCAAAATAATGATTCCAATGACCAGAACCAAAACCCGAACCAAATTGGCGATGAAATGAACAAAGAAGAAAGTATCAATTGTGAAGATGGGCATGCATCAAAATTGAAACTTTCACGGTCAAATTCAACCGGACATTCATTGGTTGAACAAGTGACATGTTCGGAGAGATACACACTGATGTTACCAGATGATGTTAGAAGGTACATTTTGGTTAACCATAGAAAAAGTTTTCAGCTTTCCATGAACAACAACATGGTTAAAGGGTTATGTTGGAGTGATAATGAAGGGAGCAGTGTAGGGAAGAGGATCAATAGTGATGCAAAGGTGGAGAAATGGGTTTTGTGTACACGACATGGTTGA 978 0.3865 MLNFHLKLFNFTSLTTLIPFLILLFLNHVESQGSMQAVPTDISQHRWQPSLVITGGALLCLLLFLGIIFCYVRNCVESRIIITDCPCSCSQGINKELLNTFPILFFSTIKDLKTDKGPLECAVCLTDFKENDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVAMIIPTHFNNDQTCEESPETVPEITLKTVPEIAQNNDSNDQNQNPNQIGDEMNKEESINCEDGHASKLKLSRSNSTGHSLVEQVTCSERYTLMLPDDVRRYILVNHRKSFQLSMNNNMVKGLCWSDNEGSSVGKRINSDAKVEKWVLCTRHG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4362 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 172 IPR013083 -
Tpr2g4362 325 PANTHER RING FINGER DOMAIN-CONTAINING 1 222 - -
Tpr2g4362 325 PANTHER RING FINGER DOMAIN-CONTAINING 225 298 - -
Tpr2g4362 325 Pfam Ring finger domain 120 163 IPR001841 -
Tpr2g4362 325 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Tpr2g4362 325 CDD RING-H2_PA-TM-RING 120 163 - -
Tpr2g4362 325 SMART ring_2 121 162 IPR001841 -
Tpr2g4362 325 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 225 298 - -
Tpr2g4362 325 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 222 - -
Tpr2g4362 325 SUPERFAMILY RING/U-box 120 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4362 Tpr-Chr2 47418900 47420660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4362 13 320 Rapid Response to Elicitors AT3G05200 31.498 7.14e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4362 K10664 - gmx:100782532 285.804