Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4356 ATGGCACCTCCGGTGGAAAACAACGCCGAATCCACCACAACCACCCCTATCTTAGAGTCTCAAAGATCTATTCCTACACCGTTTCTCACCAAAACCTATAACCTCGTTGAAGATAAATCCATCGACGATGTTATCTCATGGAATGAAGATGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCTAGCAATTTGCTTCCAAAACATTTCAAACACAATAATTTCTCCAGCTTCGTTCGTCAACTCAATACTTATGGATTTAGAAAAGTAGTACCTGATCGGTGGGAATTTTCAAACGATTGTTTCCGAAGAGGAGAGAAACGGCTTTTATGCGAGATTCAACGGCGGAAGATCTGTTCTCCGGCGGTTTCACCGTCGCCAGCGACTGTTTCTGTTTCTGCTGCTGCAACGGTGGAAACAACAACGACTGCGACAGTAGCGGTTCCTTCACCGATGCCTATTACTGTTATACCTATGGCGATGCCGATGGTTTCACCGTCGAACTCCGGTGAAGAACAAGTGATATCATCGAGTTCATCTCCGCCACGAGCACCGGCGGAGCTTCTCGACGAGAACGAGAGATTGAGAAAAGAGAACGTTCTGTTGAATAAGGAACTTGCTGAGATGAGATTGCTTTGTAACAATATATACACTCTCATGTCAAGTTATGCAAACAATAATAGCAACGGTAATAATCAATCAGACGGTGGCGCGCAAGGTAGCAGAGAATCCGGTATGACGGCGGTGAAGCCGTTGGATTTGTTACCGGCGGAGTTAAAACGGAGCTCCGGCGTTGAAATGAATCCAAAGCTATTCGGTGTTACGATTGGAACGAAGCGAATGAGAGAAAACGGTTGTGAAAATGGCGAAAGAATTGGAGAAGATACACTGTTGCGGCTACATCAACCAGTTACTACGGATGTGAAATCTGAGCCGTTGGATTGTCAGGAACAACGCGATAATAATGAAGAAACGTTGTGGTTGAATCAGTGTCGTAGAAAGAATCAGAGTTTATGTAAATGA 1026 0.4493 MAPPVENNAESTTTTPILESQRSIPTPFLTKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKHFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCEIQRRKICSPAVSPSPATVSVSAAATVETTTTATVAVPSPMPITVIPMAMPMVSPSNSGEEQVISSSSSPPRAPAELLDENERLRKENVLLNKELAEMRLLCNNIYTLMSSYANNNSNGNNQSDGGAQGSRESGMTAVKPLDLLPAELKRSSGVEMNPKLFGVTIGTKRMRENGCENGERIGEDTLLRLHQPVTTDVKSEPLDCQEQRDNNEETLWLNQCRRKNQSLCK* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4356 341 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g4356 341 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g4356 341 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g4356 341 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 325 IPR027725 -
Tpr2g4356 341 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g4356 341 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 9 325 - -
Tpr2g4356 341 SUPERFAMILY "Winged helix" DNA-binding domain 25 117 IPR036390 -
Tpr2g4356 341 MobiDBLite consensus disorder prediction 166 192 - -
Tpr2g4356 341 MobiDBLite consensus disorder prediction 167 184 - -
Tpr2g4356 341 Gene3D - 20 118 IPR036388 -
Tpr2g4356 341 Coils Coil 193 213 - -
Tpr2g4356 341 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g4356 341 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4356 Tpr-Chr2 47364012 47365690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4356 20 340 HSF AT5G62020 48.824 4.19e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr2g4356 HSF_DNA-bind 3.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4356 K09419 - gmx:100812267 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4356 2 47364012 47365690 Tpr1g0721 1 6131407 6132642 PCT