Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4355 ATGGTTCGTTCACGAAGTCACAATGTCTCCAAAAGCACAAGAATATTGAGAGTCGTCTATGATGATCCTGATGCAACTGATTCATCATCGGATGAAGAAAGTTATTTTTTTGACGAAGAACAACGGAAGAGGAAGAGGAAGAGAGTTGTGCTTGAAATTTCAGTCCCTAATGTTTTAGATGACATTGTTTATGTCGATGAAACACCGGTCGATAATGGACCGAACAAGAGTATAATGAATGAAAAACCTCGTATCAAATACAAAGGTGTTCGAATTAGAAAATCAGGAAGATGGGCTGCAGAAATTCACAATCCCATTAAAGGTAAGCGCGAATGGTTAGGTACTTTCGATACAGCAGAAGAGGCATCCAAAGTATATGAAGCTAAAAAACTTGAATTTGAAGCCATAACTAAGGTGAAAAATAGTGCATCCAACAATGTTGCTTCTATTGAAACTATGGTTGCTATTTTGAATGAGAAAAAGAGTGATACGTTAAATGTATCTTCATCGTTGCCGCAATGGGTTGATTGTGTTTCCAATTTATTCGAGAGTGGTGAATTTTCAAGTGATGAACCTATTCTTGAGAGTCTCGAGTCTAATCCTTTGGAGGGTGAATTTATGGAACAAAATTTGCTAGATTTATGTCCTTTGGACACGGTGCGAAAACCGGATGTCGATGCGACATCCGATATGTCTAGGATTGAACTTAATTGGTTAACATTTGATGAATTGGGGTGGAGTTTGAAATATTTGGATGATCTTGGTTTACTTGATGACCTTTAA 783 0.3742 MVRSRSHNVSKSTRILRVVYDDPDATDSSSDEESYFFDEEQRKRKRKRVVLEISVPNVLDDIVYVDETPVDNGPNKSIMNEKPRIKYKGVRIRKSGRWAAEIHNPIKGKREWLGTFDTAEEASKVYEAKKLEFEAITKVKNSASNNVASIETMVAILNEKKSDTLNVSSSLPQWVDCVSNLFESGEFSSDEPILESLESNPLEGEFMEQNLLDLCPLDTVRKPDVDATSDMSRIELNWLTFDELGWSLKYLDDLGLLDDL* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4355 260 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR-LIKE PROTEIN 6 199 - -
Tpr2g4355 260 CDD AP2 86 133 IPR001471 GO:0003700|GO:0006355
Tpr2g4355 260 Gene3D AP2/ERF domain 85 144 IPR036955 GO:0003700|GO:0006355
Tpr2g4355 260 Pfam AP2 domain 86 134 IPR001471 GO:0003700|GO:0006355
Tpr2g4355 260 PIRSF PTI6 207 234 IPR017392 GO:0003700
Tpr2g4355 260 PIRSF PTI6 1 183 IPR017392 GO:0003700
Tpr2g4355 260 SMART rav1_2 86 146 IPR001471 GO:0003700|GO:0006355
Tpr2g4355 260 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 199 - -
Tpr2g4355 260 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Tpr2g4355 260 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Tpr2g4355 260 SUPERFAMILY DNA-binding domain 86 134 IPR016177 GO:0003677
Tpr2g4355 260 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4355 Tpr-Chr2 47349388 47350170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4355 10 152 AP2-EREBP Transcription Factor Family AT1G68550 45.333 5.11e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr2g4355 AP2 9.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4355 - - mtr:MTR_5g057647 164.081