Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4350 ATGGAAGCAAATGGTGAGATGGGACTAATTGGAGAAAATTTTGATTCTGGTTTGATGGGTAGGATGAGGGATGATGATTTTGAAAGTAGGTCTGGAAGTGAAAATTTTGATGCTTCTGGTGATGAATTTGATGCTGGTGATGATCATCAACAAAACAAGAGGAAGAAGAAGTATCATAGACACACTCCTCAACAAATTCAAGAGCTCGAAAATTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAGCGCGCTGATCTTAGCAAGAAGCTTGGCTTGGAGAACAAGCAAGTCAAATTTTGGTTTCAGAATCGACGAACCCAAATGAAGACGCAATTGGAACGTCATGAGAACATGATTCTTAGGCAGGAAAATGAGAAGCTCCGAGCTGAGAACAGTGTGATGAAGGAAGCTATGGCAAATCCAATATGCAGCAACTGTGGCGGCCCGGCAATTCCTGGACAAATTTCAATGGAGGAACATCAGATTAGAATTGAGAATGCTCGACTGAAGGAGGAATTGGCTCGAGTGTGTACCTTGTCCAACAAGTTCCTAGGCCGTCCAGTCTCTGCATTGACTGGAATGTCTATGCAGAATCCGAATGCAGGTTTTGAATTTGGTATGGGAAGGAATGGAATTGTTGGTCCGAGCAATTTCAACATGTCGCTGCCAATGGGATTTGACATGGGAGATGGAGTTATGGGAGCTCCACCGTCAAATTCTGTAATGCGATCACCAATGGGAATGATCGGAAATGATGCCCAGCAGGAGAGAGCTGTGCTTATTGAAATCGCATTAGCTGCTATGGATGAGCTAATCAAAATGACCGAACCTGACACCCACCTCTGGATTAAGAGTCCAGACAACGGGAAGGAAATGCTGAACCATGACGAGTATGCAAGGATTGGTTCTCCTTTTAACAGTCCAAAACCAAATGGTTTTGTAACTGAAGCTACAAGAGAAACTGGGCTGTTATACACCAACAGTGCCGCTCTCGCGGAAATATTCATGGATGCGGATCGGTGGTCGGAGATGTTTCCATGTATGATTGCTCATGCTGCAACCTTGGATGTATTAACTAATGGAATGGGTGGAACCAGAAATGGATCTATGCAAGTGATGCATGCAGAGATTCAATTGCCTTCTCCATTTGTCCCGGTTCGGCAATATAGATTCCTCAGGTTTTGCAAGCAGCATGCTGAAGGTGTTTGGGCTGTAGTTGATGCTTCCATCGACTTTGGTCGGAATGGTCCCAACGGTAACCCTTACATGAGCAGTAAGAAGCTTCCATCTGGCTGTATTTTGCAGGACATGTCCAATGGTTTTTGCAAGATTACTTATGTGGATCATTCTCAATATGATGAGAGTGCTGTCCACCAAATCTTTCGTCCAATGGTTAACTCCGGTATCGCATTTGGTGCTCATAGATGGGTTGCAACTCTCCAGAGGCACTGTGAATCCCTTGCTATCCTCATGTCACCCGTATCATCTGATGAATCTGCAGTCATGAGCCCACAGGGCAAGAGAAGCATGTCAAAGCTCGCGCAGCGGATGACTGATTACTTCTGGTCTGGAGTTTGTCCTTCGTCAGCTTGCAAGTGGGACATGCTTCACATTAATAACATGGGCACCAGTGACGTGAGAATCATGTCCCGAAAAATTTCGGATCCCTCTGGTGAAAATCATAGCATTGTGCTAAGTGCTGCAACTTCTGTTTGGATGCCATTGTCGCGGCAAAGGGTATTTGATTTCCTCCGTGATGCACGATTGAGAGGCGAGTGGGATGTTTTGTCCGGTGGTGGATCAATGCAGGAGATGGTCCATATTGCTACGGGACAAGCAATTGGAAATTCCGTTTCTATCCTCGGTGCTAATACTGTAAGTGCTCTTTTTTCCATTATGCTATATCTGCAAGATTCATGGACTGATAGTTCTGGCTCAATGATTGTGTATTCTCCTATCAACATGGATTCCTTGAGCTTGGTGATGAGCGGTGGCGATTCTTCATCTGTTGCTCTGTCGCCTTCGGGCTTTTCAATTCTTCCGGATGGCCATTCAAGTAACAACAACATCGTTGGAACTTCAAGTGACGGAAGTAGCAGCAGTGGAAGCGACAATGACAATGGCGGATGCTTGCTCACAGCTGGATTACAAATGGTGCTGACCAATGTTCAATCAAGTAAGCTAACAAACGATTCCGTTGATACCATTAATGATCTCATCGCATGCACCGTTCAGAAGATCAAAGACGCTCTCGGAGTTGCATGA 2268 0.4511 MEANGEMGLIGENFDSGLMGRMRDDDFESRSGSENFDASGDEFDAGDDHQQNKRKKKYHRHTPQQIQELENFFKECPHPDEKQRADLSKKLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENEKLRAENSVMKEAMANPICSNCGGPAIPGQISMEEHQIRIENARLKEELARVCTLSNKFLGRPVSALTGMSMQNPNAGFEFGMGRNGIVGPSNFNMSLPMGFDMGDGVMGAPPSNSVMRSPMGMIGNDAQQERAVLIEIALAAMDELIKMTEPDTHLWIKSPDNGKEMLNHDEYARIGSPFNSPKPNGFVTEATRETGLLYTNSAALAEIFMDADRWSEMFPCMIAHAATLDVLTNGMGGTRNGSMQVMHAEIQLPSPFVPVRQYRFLRFCKQHAEGVWAVVDASIDFGRNGPNGNPYMSSKKLPSGCILQDMSNGFCKITYVDHSQYDESAVHQIFRPMVNSGIAFGAHRWVATLQRHCESLAILMSPVSSDESAVMSPQGKRSMSKLAQRMTDYFWSGVCPSSACKWDMLHINNMGTSDVRIMSRKISDPSGENHSIVLSAATSVWMPLSRQRVFDFLRDARLRGEWDVLSGGGSMQEMVHIATGQAIGNSVSILGANTVSALFSIMLYLQDSWTDSSGSMIVYSPINMDSLSLVMSGGDSSSVALSPSGFSILPDGHSSNNNIVGTSSDGSSSSGSDNDNGGCLLTAGLQMVLTNVQSSKLTNDSVDTINDLIACTVQKIKDALGVA* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4350 755 MobiDBLite consensus disorder prediction 1 62 - -
Tpr2g4350 755 Coils Coil 106 141 - -
Tpr2g4350 755 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Tpr2g4350 755 SMART HOX_1 54 116 IPR001356 GO:0003677
Tpr2g4350 755 CDD START_ArGLABRA2_like 258 486 - -
Tpr2g4350 755 SUPERFAMILY Bet v1-like 506 686 - -
Tpr2g4350 755 Gene3D - 44 128 - -
Tpr2g4350 755 Pfam START domain 263 487 IPR002913 GO:0008289
Tpr2g4350 755 CDD homeodomain 55 112 IPR001356 GO:0003677
Tpr2g4350 755 ProSiteProfiles START domain profile. 254 490 IPR002913 GO:0008289
Tpr2g4350 755 SMART START_1 263 487 IPR002913 GO:0008289
Tpr2g4350 755 SUPERFAMILY Homeodomain-like 41 112 IPR009057 -
Tpr2g4350 755 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Tpr2g4350 755 MobiDBLite consensus disorder prediction 18 52 - -
Tpr2g4350 755 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 5 753 - -
Tpr2g4350 755 SUPERFAMILY Bet v1-like 259 488 - -
Tpr2g4350 755 Gene3D - 264 489 IPR023393 -
Tpr2g4350 755 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Tpr2g4350 755 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 753 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4350 Tpr-Chr2 47285702 47290254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4350 1 752 Homeobox Transcription Factor Family AT3G61150 49.869 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g4350 START 9.8e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4350 K09338 - gmx:100785102 1004.2