Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4328 ATGGCACCTTCTCGGGTAGCAGGAGGTTTAGCCCAATCATCATCAAGTTCTGGAATTTTCTTTCAAGGAGAGGGGCAGTCACATAATTTAGTCAACTCTCACTTGAGCTCATCTTTAGTCAACTCATCTAACACTGTTCCTGGAACTGGTCATTCCAACCTTGGTCCAGTTTCTGGGGATATGAATAACGCAATTTTGAATAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGACCGCCATATGCAAAGAAGTGCTAGCATTAATGGTGACTCATACTTAAGATTACCTGCATCACCTTTGTCATTCACATCAAATAATATTAGCATTTCTGGGTCACCTGCAATGGATGGTTCCTCTGTAGTACAGCAGAATTCTCATCAAGATCAGAATGCTCAACAATTGCAGCAGAATCAACAGAAGCTGCAGGGTGCTTCAAGTACTATGCATTTGCCTGCCTCTCAAACTGGCTCATCTTCGCACCAAATGGGTGCACAAGTAGCAGGATCTTTCATTCAAGATCCAAATAATATATCCCACTTGCTGAAAAAACGTAGGGTGGATATCAAACAAGAAGATATAATGCAACAACAGGTAATACAGCAGCTTCTTCAGAGACAAGACCCTACGCAATTCCAAAGTCGCAGTCCACAGTTACAGGCTATGTTTCAGCAACAGCATAGGCTTAAGCAACAACATATCTTTCAGTCATTGCCGCAGGCCCAGCGAATACAATTGCTGCAGCAGCAACAACAGCAGCAGCAGCAACAACAACAACAAATGCAGAGGCAGCAAATACAACAACAAATGATGCAGCCCTCAGCTGGTGTTAAGCGTCCACCTGATAGTGGTGTTGGAGGTGTATGTGCCCGTCGATTGATGCAGTACCTCTATCATCAAAGACAGCGACCAAGTGATAATAGTATTGCATATTGGAGGAAATTTGTGGCTGAATATTACTCTCCCCGTGCAAAGCAACGGTGGTGCTTGGCATTATATAGTAATGTTGGACACCATACAGCTGGCGTTTTACCGCAAGCAACTACGCATGCTTGGCAATGTGATATATGTGGAACTAAATCTGGAAGAAGGGGATTTGAAGCGACTTATGATATACTACCCAGACTTAACGTAGTCAAATTTGGTGGTGGCGTGATCGATGAACTTCTGTTTTTGGACTTGCCGCGTGAAATAAGATTTTCTTCTGGTTTGATGATGTTAGAATATACAAAAGCAGTTCAAGAGTGTGTGTATGAGCAGCTCCGCGTTGTTCGTGAGGGTCAGCTTCGTATTGTATTTACTCAAGACCTGAAGATATTTTCTTGGGATTTCTGTGTAAGGCGCCATGAAGAACTTCTTCCTCGAAAGTTAGTTGCACCACAGGTCAACCAATTAGTTCAAGTAGCGCAAAAATGCCAAAGTACAATTTCTGAAAGTGGGTCAGATGGGGTTTCTCAGCATGACTTGCAAACAAACAGCAACATGGTCCTAACTGCTGGGCGTCAGCTTGCAAAGAGTTTGGAGCTACAATCACTAAACGACTTGGGCTTTTCAAAAAGATTTGTGAGAACTTTGCAGATTTCTGAGGTTTGCAATAGCATGAAAGATCTAATCGATATCTGTTTTGATCACAATGTCGGAGCAATTGAGAGTTTGAAAAATTATTCTCAATTTTCAACCTCGTCAAAGCACCAAATGCAAAAGATGCAGGAGATGGAACAGGCAGCAAATGCTCAAGGTCTCCCACCTGATCGAAACACACTTAATAAACTGATGACATTGAATCCTGGATCTAACAATCTTATAAACAACAATCACAATATGGGCAATCGTGGTACTTTGTCTGGGCCATCACAAGCTGCTATGGCAATGTCCAATTACCAGAATCTTCTCATGAGACAAAACTCGATGAATTCAAGCCCCAGTTCACTTCATCGAGAAGGGTCCCCTTTTAATAACTCGATCCAGAGTCCCTCATCAGCTTCTTTGCAAGGTGCTGGTGCTGCTGCTATAATCCCAGGCTCTATGCAGAATTCACCTCACAACAGTAGTGGTGGTTTCTCAAACCAACATCTAGCCTCACAACAGCAGCGGCAGCAGCAGCAGCAGCAGCAACAACACCACCTTCAACAGCGCTCGTTAAGTGCAAATAATTTACCTCAACAAAATCACTCGCAGGGACCTCAAGGAAATCAATCACTGCAACAACAGATGATCCAGCAACTACTGCAGGATATGTCAAATAACAACGGGGGAGTGCAACAACAGTCTCATAGTGGACCCATTGTAAGTGGGAATATGGCAAAGAATAATTTGGGTTTTGGGGGACAAACTCCACCCACAGCTGGAGGAGGCTCTGCCAGTGGTCCAGCAAATAATGGACCTGTTTCAAGGAGTAATAGCTTCAAAGCTTCTTCAAACAGCGACTCTTCTGCAGCAGCTGGTGGAGGCGGCAACAATGGATTCAACCAGAGAGCATCTGATATGCAGCAAAATCTTGCTTTGCAAGATGTGGCTTCGGAATTTGGCCATGAGTTTGCGGATAACCCCTTCTTTAACAGTGATCTTGACGATAACATGGGTTTTAACTGGAAGACATGA 2640 0.4364 MAPSRVAGGLAQSSSSSGIFFQGEGQSHNLVNSHLSSSLVNSSNTVPGTGHSNLGPVSGDMNNAILNSVANSAPSVGASSLVTDANSALSGDRHMQRSASINGDSYLRLPASPLSFTSNNISISGSPAMDGSSVVQQNSHQDQNAQQLQQNQQKLQGASSTMHLPASQTGSSSHQMGAQVAGSFIQDPNNISHLLKKRRVDIKQEDIMQQQVIQQLLQRQDPTQFQSRSPQLQAMFQQQHRLKQQHIFQSLPQAQRIQLLQQQQQQQQQQQQQMQRQQIQQQMMQPSAGVKRPPDSGVGGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKQRWCLALYSNVGHHTAGVLPQATTHAWQCDICGTKSGRRGFEATYDILPRLNVVKFGGGVIDELLFLDLPREIRFSSGLMMLEYTKAVQECVYEQLRVVREGQLRIVFTQDLKIFSWDFCVRRHEELLPRKLVAPQVNQLVQVAQKCQSTISESGSDGVSQHDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRFVRTLQISEVCNSMKDLIDICFDHNVGAIESLKNYSQFSTSSKHQMQKMQEMEQAANAQGLPPDRNTLNKLMTLNPGSNNLINNNHNMGNRGTLSGPSQAAMAMSNYQNLLMRQNSMNSSPSSLHREGSPFNNSIQSPSSASLQGAGAAAIIPGSMQNSPHNSSGGFSNQHLASQQQRQQQQQQQQHHLQQRSLSANNLPQQNHSQGPQGNQSLQQQMIQQLLQDMSNNNGGVQQQSHSGPIVSGNMAKNNLGFGGQTPPTAGGGSASGPANNGPVSRSNSFKASSNSDSSAAAGGGGNNGFNQRASDMQQNLALQDVASEFGHEFADNPFFNSDLDDNMGFNWKT* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4328 879 Pfam LIM-domain binding protein 305 566 IPR029005 -
Tpr2g4328 879 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 167 718 - -
Tpr2g4328 879 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 151 - -
Tpr2g4328 879 MobiDBLite consensus disorder prediction 128 177 - -
Tpr2g4328 879 MobiDBLite consensus disorder prediction 649 677 - -
Tpr2g4328 879 Coils Coil 705 725 - -
Tpr2g4328 879 MobiDBLite consensus disorder prediction 649 679 - -
Tpr2g4328 879 Coils Coil 257 282 - -
Tpr2g4328 879 MobiDBLite consensus disorder prediction 794 828 - -
Tpr2g4328 879 PANTHER LIM DOMAIN-BINDING PROTEIN 167 718 IPR029005 -
Tpr2g4328 879 PANTHER LIM DOMAIN-BINDING PROTEIN 5 151 IPR029005 -
Tpr2g4328 879 MobiDBLite consensus disorder prediction 691 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4328 Tpr-Chr2 46989615 46995509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4328 292 568 C2H2 Transcription Factor Family AT1G43850 55.197 8.16e-98 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4328 - - gmx:100816886 1110.9