Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4308 ATGGTATTCACTAGTAACAACAACTCTTCCTTTTCATACTCAATTTCATCAAAAGATTCTTCTTCTTTCCACACATCATCACCGGACTCTGAGCTCCGATTAGCGGCAAGTAGTCCCAAGAAACCGGCAGGGAGAAAGATATTCAAAGAAACTCGCCACCCGGTATACCGGGGTGTGAGGAAGCGGAACTTAGATAAATGGGTTTGTGAAATGAGAGAGCCAAACAAAAAGACTAGAATTTGGCTAGGAACTTTTCCAACCGCCGAGATGGCAGCCCGAGCACACGATGTTGCGGCAATGGCATTGAGAGGTCGCTATGCCTGTCTCAATTTCGCCGACTCAGTGTGGCGGCTCCCTATTCCTATAACCTCTAAAACAAAAGATATTCAAAAGGCAGCTACCGAAGCCGCTGAGGCTTTTAGACCAGAAAAGATTTTAATGACAAACGACATTGACACCGTTGTAGCTGTCATCGCTGCAAAGGAGCTGAGTATGTTTTGTGTGGAAGAGCAAGACGACGAAGAACTGTTGAATATTCCAGATTTTTTTAGTAATATAGCACTAATGTCCCCTGCACATAGTTTTGAGCATGAGTATGAAGAATTCGAAGACTTTCAAGATGATGAGGTATCACTATGGAACTTTTAA 648 0.4336 MVFTSNNNSSFSYSISSKDSSSFHTSSPDSELRLAASSPKKPAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPITSKTKDIQKAATEAAEAFRPEKILMTNDIDTVVAVIAAKELSMFCVEEQDDEELLNIPDFFSNIALMSPAHSFEHEYEEFEDFQDDEVSLWNF* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4308 215 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Tpr2g4308 215 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 5 215 - -
Tpr2g4308 215 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Tpr2g4308 215 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Tpr2g4308 215 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Tpr2g4308 215 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Tpr2g4308 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 215 IPR045277 GO:0003700
Tpr2g4308 215 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Tpr2g4308 215 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Tpr2g4308 215 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4308 Tpr-Chr2 46584151 46585139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4308 6 215 AP2-EREBP Transcription Factor Family AT4G25470 53.670 2.50e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g4308 AP2 7.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4308 - K09286 mtr:MTR_6g465460 290.426