Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4305 ATGGCCTCTATAACAACAACACTATGCCATTACCACATCCCCCTATCATCATCCTTCAAAATCCACAAACCAACACACTCATTCCCACTCCCACTCTCACACTCCCCGCGTCATCTCATTCACCCCTTCAAATTCCAACCAAAAACCATTCCATCTCGTTTTCTTCTTTCCCAACCGCCACGCGCCTATGTCACTGGACCAGCATCCGACCCGAATGTTGCTGACCCGGATCCGAAACTTGACGGATTAATACAAGAGGAACCATACATACCAAGGGTTATTACATGGGAGCTTCTCTCTTTTCTTCTTGTTAAGCATAAATTTCGTCTTGCTGTTTGTGTTGCTTCTCTCTTTGCTTGCACCACTTGTACCCTATCCATGCCCATTTTTTCTGGACGGTTTTTTGAAGTTCTTATTGGTGTCAGACCCGAGCCGTTGTGGAGTCTTCTCAGTAAAATGGGAGTTCTGTATGCACTAGAGCCACTTTTTACAGTTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAGTTATGTCAACACTAAGAGCTCAAATCTTTGGAAAATTATTGATTCAGAAGGTTGAATTTTTTGACAAATACAAGGTAGGCGAAATCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAAATATTGTCAGTGAGAATGTTTCAAGGGATCGTGGATTCAGGGCATTATCTGAGGTCACTGGAACAATGTTCATACTTTTTACTTTATCCCCTCAACTGGCTCCAATTCTTGGTGCTCTGATGATCGCAGTTTCCGTTTCAATCGCTGTCTACAAGAGATCAACTTTGCCTGTTTTTCAAGAACATGGTTTGGCCCAAGCATCTATCTCTGATTGTATAACAGAAACTTTTTCTGCTATTAGAACAGTGCGATCTTTTAGTGGAGAAAAGCGCCAAATGTTTATGTTTGCTAACCAGGTTCTGTCCTTCCAATCGAGTGGTATAAAGCTTGGAACTTTCAAATCTATTAACGAATCCTTGACTAGAGTAGCTGTTTATATTTCTTTAATTGCTCTGTATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTCAACTCTCTGTTGGAACTATGGCTTCTTTTATTGGATATACATTCACTTTAACATTCGCTGTTCAAGGATTGGTTAATACTTTTGGCGATCTTCGTGGATCTCTTGCGGCTGTTGAGAGGATCAACTCTGTTTTGTCTGGAGTTCAAGTTGATGATGCCCTTGCCTATGGCTTAAAAAGAGAACTAAACCAAAAAGCAGTGAACGATGAAAACCTTAAATTGTTCTTCTCTGATAGTTCTTCTGAGAAAAACCAAAATAATCATTTACATTACATGTCAGCATTAAAAACGTCGACAAATCTGTTTAGCTTAGCTTGGTCTGGAGATATTTCTCTTGAAGATGTTTATTTCTCTTATCCTCTAAGGCCAGATGTGGAAATTTTGCGTGGCTTAAACTTAAGACTAAAATGTGGAACTGTAACTGCACTAGTAGGTGCTAGTGGTGCAGGAAAGAGTACAATAGTACAGCTATTGTCTCGTTTTTATGAGCCTTCAAGAGGTTGTATAACAGTTGGTGGAGAAGATGTCCGAACATTTGATAAAAGTGAATGGGCCCGAGTTGTTTCTATCGTAAATCAAGAACCTGTTCTGTTTTCCGTTTCTGTTGGAGAAAATATTGCATATGGACTTCCAGATGACGATGTTTCTAAAGACGATGTGATTAAGGCAGCAAAGGCAGCAAATGCTCATGAATTTATAATTTCACTTCCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTACTGAGTGGAGGACAAAGACAGAGAATTGCAATTGCCCGAGCTCTTTTGAAGAATGCTCCTATCCTTATACTTGATGAGGCTACAAGTGCGCTGGATACCGTCAGTGAGCGATTGGTCCAAGATGCTCTCAACCGTTTGATGAACGGTAGGACAACATTAGTCATAGCTCACAGATTAAGCACAGTACAAAATGCACATCAAATTGCGCTATGTTCAGATGGGAAAATTGCAGAATTAGGCACTCATTTTGAGTTATTGGGTAAGAAGGGCCAATACGCTTCATTAGTTGGCAATCAAAGGCTTGCATTTGAATAG 2148 0.4046 MASITTTLCHYHIPLSSSFKIHKPTHSFPLPLSHSPRHLIHPFKFQPKTIPSRFLLSQPPRAYVTGPASDPNVADPDPKLDGLIQEEPYIPRVITWELLSFLLVKHKFRLAVCVASLFACTTCTLSMPIFSGRFFEVLIGVRPEPLWSLLSKMGVLYALEPLFTVIFVINMNIVWEKVMSTLRAQIFGKLLIQKVEFFDKYKVGEITGLLTSDLGSLKNIVSENVSRDRGFRALSEVTGTMFILFTLSPQLAPILGALMIAVSVSIAVYKRSTLPVFQEHGLAQASISDCITETFSAIRTVRSFSGEKRQMFMFANQVLSFQSSGIKLGTFKSINESLTRVAVYISLIALYCLGGSKVKAGQLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGSLAAVERINSVLSGVQVDDALAYGLKRELNQKAVNDENLKLFFSDSSSEKNQNNHLHYMSALKTSTNLFSLAWSGDISLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGASGAGKSTIVQLLSRFYEPSRGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDDVSKDDVIKAAKAANAHEFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDTVSERLVQDALNRLMNGRTTLVIAHRLSTVQNAHQIALCSDGKIAELGTHFELLGKKGQYASLVGNQRLAFE* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4305 715 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 394 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g4305 715 CDD ABC_MTABC3_MDL1_MDL2 471 710 - -
Tpr2g4305 715 CDD ABC_6TM_TAP_ABCB8_10_like 116 402 - -
Tpr2g4305 715 Pfam ABC transporter transmembrane region 112 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g4305 715 Pfam ABC transporter 489 640 IPR003439 GO:0005524
Tpr2g4305 715 Gene3D - 469 712 IPR027417 -
Tpr2g4305 715 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 44 713 IPR039421 -
Tpr2g4305 715 SUPERFAMILY ABC transporter transmembrane region 91 402 IPR036640 GO:0005524|GO:0016021
Tpr2g4305 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 710 IPR027417 -
Tpr2g4305 715 Gene3D ABC transporter type 1, transmembrane domain 85 408 IPR036640 GO:0005524|GO:0016021
Tpr2g4305 715 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 471 709 IPR003439 GO:0005524
Tpr2g4305 715 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 44 713 - -
Tpr2g4305 715 SMART AAA_5 498 692 IPR003593 -
Tpr2g4305 715 ProSitePatterns ABC transporters family signature. 612 626 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4305 Tpr-Chr2 46561742 46568040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4305 176 715 Calmodulin-binding Proteins AT2G36910 36.929 3.36e-79 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4305 K05657 - gmx:100791034 1127.08