Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4303 ATGGATTTCGACGGTGGTAACAAGCGTGTTTATAACCGACTCGGTGGTTCTACCGGTGGCGGTGATTCAAGGAATCAGAAAGTGTGTTTTCAATGGCAAGCGGGGAAGTGTAATCGTTATCCATGTCCATTTTTGCATAGTGAGTTACCTACTTCTAATGGTAATGGTGCACCTTCAAAGCGGCCTTATGCTGATAATAATTCGGGTTTTTCGGGGAACCGACGTGGTGGTGGTTCGAGTTTTAATACATGGGGGCCAGGGCGTGGTGGTGGACGTGGTCGCGGTGGTGGACGTGGTGCTGTTGGAGGTGGTGGTAGGGGTGTTGTGAATGTTGAAAAAGTTTGCACTTATTGGATTCAAGGAACTTGTAGTTATGGAGATCGGTGTAAGTTTCTTCATTCTTGGAGTTTAGGGGATGGCTTTTCTTTATTGACACAGCTTGAAGGACATAAGAAGGTTGTGAGTGGAATTGCTATGCCTTCTGGTTCGGATAAGCTTTATACTGGAAGTACTGATGAGACAGTAAGGGCTTGGGACTGCCAGTCTGGACAGTGTATAGCTGTGATCAACCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCCTGGCTTTTTGTAGGCATACCCAATTTTGTTAAGGCCTGGAATACACAAAATTCCATGGAGATAAGTCTAGATGGCCCTGTCGGACAAGTTTATGCACTTGTTGTGATTAATGATATGCTATTTGCCGGTACGCAGGATGGAGCTATACTACTATGGAGGTTTAATGTAGCTGCCAACTGTTTCGAGCCTGCTGCATCGCTGAAAGGCCACACACGTGGTGTTGTTTCATTGGTTGTTGGAGCTAATAGACTGTATTCTGGTTCAATGGATAATACTATTAGAGTGTGGAACATTGAAACTTTGCAGTGTTTACAGACACTGACCGAGCACACATCTGTTGTGATGTCCGTTCTTTGCTGGGATCAGTTCCTTATATCTTGTTCATTAGACAAAACAGTGAAGGTGTGGTTTGCTACAGAAACTGGAAATTTGGAAGTGACATATACTCACCCTGAAGAACATGGTATACTCACCCTCTGTGGGATGCATGATTCACACGGCAAGCCCATATTGATGTGCTCTTGCAATGATAACACTGTTCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAAATATTCAACAAACAAGAAGTGCGGGCAATTCAGACCGGTCCTGGTAGCATATTCTTCACCGGTGATGGTACCGGCCAAGTGAGAGTGTGGAATTGGATACCTGAGCCAGCGGCTAATAGCACCCAATAA 1317 0.451 MDFDGGNKRVYNRLGGSTGGGDSRNQKVCFQWQAGKCNRYPCPFLHSELPTSNGNGAPSKRPYADNNSGFSGNRRGGGSSFNTWGPGRGGGRGRGGGRGAVGGGGRGVVNVEKVCTYWIQGTCSYGDRCKFLHSWSLGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRAWDCQSGQCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMEISLDGPVGQVYALVVINDMLFAGTQDGAILLWRFNVAANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNIETLQCLQTLTEHTSVVMSVLCWDQFLISCSLDKTVKVWFATETGNLEVTYTHPEEHGILTLCGMHDSHGKPILMCSCNDNTVRLYDLPSFAERGKIFNKQEVRAIQTGPGSIFFTGDGTGQVRVWNWIPEPAANSTQ* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4303 438 SMART WD40_4 390 427 IPR001680 GO:0005515
Tpr2g4303 438 SMART WD40_4 263 300 IPR001680 GO:0005515
Tpr2g4303 438 SMART WD40_4 140 179 IPR001680 GO:0005515
Tpr2g4303 438 SMART WD40_4 303 340 IPR001680 GO:0005515
Tpr2g4303 438 SMART WD40_4 344 387 IPR001680 GO:0005515
Tpr2g4303 438 SMART WD40_4 219 256 IPR001680 GO:0005515
Tpr2g4303 438 SUPERFAMILY CCCH zinc finger 112 134 IPR036855 GO:0046872
Tpr2g4303 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 303 - -
Tpr2g4303 438 ProSiteProfiles Zinc finger C3H1-type profile. 110 136 IPR000571 GO:0046872
Tpr2g4303 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 188 IPR001680 GO:0005515
Tpr2g4303 438 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 435 - -
Tpr2g4303 438 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Tpr2g4303 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 309 IPR001680 GO:0005515
Tpr2g4303 438 PANTHER - 1 435 IPR044715 -
Tpr2g4303 438 ProSiteProfiles Zinc finger C3H1-type profile. 23 49 IPR000571 GO:0046872
Tpr2g4303 438 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Tpr2g4303 438 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Tpr2g4303 438 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Tpr2g4303 438 MobiDBLite consensus disorder prediction 71 100 - -
Tpr2g4303 438 Gene3D - 122 227 IPR015943 GO:0005515
Tpr2g4303 438 SMART c3hfinal6 23 48 IPR000571 GO:0046872
Tpr2g4303 438 SMART c3hfinal6 111 135 IPR000571 GO:0046872
Tpr2g4303 438 Pfam Zinc finger domain 115 133 - -
Tpr2g4303 438 Pfam WD domain, G-beta repeat 267 300 IPR001680 GO:0005515
Tpr2g4303 438 Pfam WD domain, G-beta repeat 143 179 IPR001680 GO:0005515
Tpr2g4303 438 Pfam WD domain, G-beta repeat 305 339 IPR001680 GO:0005515
Tpr2g4303 438 SUPERFAMILY WD40 repeat-like 133 430 IPR036322 GO:0005515
Tpr2g4303 438 Gene3D - 233 438 IPR015943 GO:0005515
Tpr2g4303 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4303 Tpr-Chr2 46542073 46546971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4303 137 311 Eukaryotic Initiation Factors Gene Family AT2G46290 24.365 1.01e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr2g4303 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4303 - - mtr:MTR_6g465150 798.505