Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4298 ATGGCTTCCGATCTTGAACTCAAAGCCAAAGAGGCCTTTGTTGAAGACCACTTTGAATTAGCCGTGGAACTTCTCACACAAGCCATTGATCTTGACCCTAAAATTTCAACACTTTTTGCTGATCGTGCTCAGGCCAATATCAAACTCAATAACTTCACTGAGGCTGTTGCTGATGCAAACAAAGCAATTGAGTTGGATCCTTCTCTATCAAAGGCATATATGCGCAAAGGTATTGCATGCATGAAGCTTGAGGAATATCAGACTGCTAAGACCGCTTTGGAGACAGGTGCCTCATTGGCAGAGGACAAATCAAGATTTGTTAATTTGATCAAAGAATGTGAAAAACTCATTGCAGAAGAATCTTATACCATACCTACACAGGAAAAGTCCACAGCACAGGATGCAATTCCTCAAGATGTTCAGCTACAAGATCTTGCAGAGAAGCCGATAGTGGCGGTTGCTAAGCCTAAATATAGGCATGAATTTTATCAGAAACCTGAAGAAGTGGTTGTGACCATATTTGCAAAGGGGGTCTCAAAAGAAAGCATTACTGTCGAATTTGGTGAACAAATACTAAGTGTCAAAATTGATGTCCCTGGAGAAGATTCATATGTTTTACAAAATCGCTTGTTTGGAAAGATTGTACCTTCCAGTTGCCGGTATGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCTAAAGCTGAATCTATTCACTGGAAGTCCCTTGAATTCACCACAGAAACCACTGTTGCACCGAGGGCTATTGTCTCTTCAGTTACTGGAACTCAAAGACCTACTTACCCTTCCTCAAAACCGAAAAGAGTAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAGGAAAAAGATGAAAACCTTGATGGCGATGCCGCATTGAACAAATTTTTCCGAGAAATATATCAAGATGCTGATGAGGATACTAGAAGAGCAATGAAAAAATCATTTGTGGAGTCTAATGGAACAGTGCTGTCAACAAACTGGAAAGAAGTGGGAACAAAGAAGGTTGAAGGAAGTCCTCCAGATGGCATGGAATTGAAGAAATGGGAATATTAA 1077 0.403 MASDLELKAKEAFVEDHFELAVELLTQAIDLDPKISTLFADRAQANIKLNNFTEAVADANKAIELDPSLSKAYMRKGIACMKLEEYQTAKTALETGASLAEDKSRFVNLIKECEKLIAEESYTIPTQEKSTAQDAIPQDVQLQDLAEKPIVAVAKPKYRHEFYQKPEEVVVTIFAKGVSKESITVEFGEQILSVKIDVPGEDSYVLQNRLFGKIVPSSCRYEVLSTKIEIRLAKAESIHWKSLEFTTETTVAPRAIVSSVTGTQRPTYPSSKPKRVDWDKLEAQVKKEEKDENLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4298 358 SUPERFAMILY TPR-like 5 114 IPR011990 GO:0005515
Tpr2g4298 358 Pfam Tetratricopeptide repeat 41 68 IPR019734 GO:0005515
Tpr2g4298 358 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
Tpr2g4298 358 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Tpr2g4298 358 Gene3D - 156 246 IPR008978 -
Tpr2g4298 358 Pfam CS domain 159 234 IPR007052 -
Tpr2g4298 358 Pfam SGS domain 277 356 IPR007699 -
Tpr2g4298 358 SMART tpr_5 2 35 IPR019734 GO:0005515
Tpr2g4298 358 SMART tpr_5 70 103 IPR019734 GO:0005515
Tpr2g4298 358 SMART tpr_5 36 69 IPR019734 GO:0005515
Tpr2g4298 358 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
Tpr2g4298 358 SUPERFAMILY HSP20-like chaperones 151 250 IPR008978 -
Tpr2g4298 358 ProSiteProfiles CS domain profile. 155 244 IPR007052 -
Tpr2g4298 358 CDD p23_CS_SGT1_like 161 244 - -
Tpr2g4298 358 Gene3D Tetratricopeptide repeat domain 1 132 IPR011990 GO:0005515
Tpr2g4298 358 PANTHER PHOSPHATASE-RELATED 1 358 - -
Tpr2g4298 358 Coils Coil 42 62 - -
Tpr2g4298 358 ProSiteProfiles SGS domain profile. 267 358 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4298 Tpr-Chr2 46398765 46403849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4298 1 100 U-box Gene Family AT3G07370 27.000 2.56e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4298 K12795 - gmx:100780174 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4298 2 46398765 46403849 Tpr2g4298 2 46398765 46403849 ECH