Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4280 ATGGTATCCAAAAACCCGAACCCGCCCGAAGGTTTCTGCTTGGATCCGAATCCCACGGCTCTACCCGGTTTCGGCCCCTTCGCTTCCGTTTCCGCCGCCGCCAACTCTTCCGATGATGCCTCCAAGAAAATTCGCAAACCATATACTATAACTAAGTCTAGAGAGAATTGGACTGAACCTGAACATGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTATTGGATCAAAGACCGTTATACAGATACGTAGCCACGCACAGAAATACTTTCTGAAGGTTCAGAAGAGTGGAGCAAATGAACATCTTCCTCCACCCAGGCCTAAAAGAAAAGCTGCGCATCCATATCCTCAAAAAGCTTCCAAAAGTGCTCCTGTACTTCCACAAGTACCAGGATCTATTCAATCTTCATCGGCTTTGCTTGAACCTGGATTTATACTGAAGCATGAATCCACACCAATGCTTGAAACTCCTATTATGAACACTGTGGTGTCTTCATGGTCAAACCACCCGTTACAAAATACCAATTTATTGCAAGTGCCAACAGTAAATAATTCTTGCAGTAGCAGTGAAAGTACTCCTAAAGTGTGGCCTGTTGGTGAATCTAATAGTCAAGGGAATAAAATCCTTCCACTGAGAGTTCTTCCAGATTTTTCTCAAGTGTACAACTTCATTGGCAGTGTATTTGACCCAGAGGCAACTGAGCATCTACAGAAACTTAAACAAATGGACCGTATAGATGTTGAGACGGTGCTTTTGTTGATGAGAAATCTGTCTATCAATTTAACTAGCCCAGATTTTGAGGATCATAAGAAGCTGCTTTCATCCTATGAAGTCGATCATGAGACAAATAACTATCTCAATCCAGATAGACTGATACACGACGAACACTTGAAGAGTGCTGCTACTTAA 936 0.4241 MVSKNPNPPEGFCLDPNPTALPGFGPFASVSAAANSSDDASKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKSAPVLPQVPGSIQSSSALLEPGFILKHESTPMLETPIMNTVVSSWSNHPLQNTNLLQVPTVNNSCSSSESTPKVWPVGESNSQGNKILPLRVLPDFSQVYNFIGSVFDPEATEHLQKLKQMDRIDVETVLLLMRNLSINLTSPDFEDHKKLLSSYEVDHETNNYLNPDRLIHDEHLKSAAT* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4280 311 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Tpr2g4280 311 MobiDBLite consensus disorder prediction 104 137 - -
Tpr2g4280 311 PANTHER PROTEIN REVEILLE 6 3 296 - -
Tpr2g4280 311 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Tpr2g4280 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Tpr2g4280 311 PANTHER SWI/SNF COMPLEX-RELATED 3 296 - -
Tpr2g4280 311 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Tpr2g4280 311 CDD SANT 56 99 IPR001005 -
Tpr2g4280 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Tpr2g4280 311 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Tpr2g4280 311 Gene3D - 56 104 - -
Tpr2g4280 311 SMART sant 53 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4280 Tpr-Chr2 46173398 46181305 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr2g4280 Myb_DNA-binding 7.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4280 - - gmx:100783949 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4280 2 46173398 46181305 Tpr2g4280 2 46173398 46181305 ECH