Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4243 ATGGCTCCTACAAGTACAAGGCGTTCTGCTGTTAAGAAGGGTAATAGGAAATCCTTTAGGACTGTTGTTTATCCAGACCAGGACAAGATTGAAATGTGTCCAACATTTCGATCTATTTGGAGTGATAACTTAGAGAAACGCCCATGGGGGTATCTATGGCATCCCAGTGGAAATACAGCCATGCTGGAATTCCACATAGCTGATGGTCAGTGTTACATGACCTCGGGCCGGATGGCAGCTATTTTATACGGTTTAAGACAACCGACTGATGTTGTAGTTGTTTATGAACTCATTGACGATGAAAATTATTTTAAGTTGCATAATATGAATGCGACGGAAGTTATTGACCTCACAAGTGATCGTGAAGATTTTCATGTTTTACCGAATGACGACACTTATACTCTTCCCGAGTTTGAAAACGACCGTCACTATGGTTGGGAAACAATAGTGACTGAATGCAATTCCAGTGACAAAAGGGCGCAAGTTCTGAACCTTCCGTCGCGAACGGCCAAGCATGTGCTCAGAGGCAGGAACAACATTGTACTCAGAACTCGGCACAACATGGACCAAACCATATGCACTATAAAGACTTACACTTTGAAGAACAATCCAGGAAAATTCCGAATGTACCTGACTGATGGTTGGTATCAGTTTAGGCAAGCTAATCAACTACAGGAGGGAGACTTGGTTCAGTTTCAGCTGTCCGATCCACCTGATGTTTTGGTGGTTGACATTGTTCGAGGCAACCGCTTGAACTAA 759 0.4321 MAPTSTRRSAVKKGNRKSFRTVVYPDQDKIEMCPTFRSIWSDNLEKRPWGYLWHPSGNTAMLEFHIADGQCYMTSGRMAAILYGLRQPTDVVVVYELIDDENYFKLHNMNATEVIDLTSDREDFHVLPNDDTYTLPEFENDRHYGWETIVTECNSSDKRAQVLNLPSRTAKHVLRGRNNIVLRTRHNMDQTICTIKTYTLKNNPGKFRMYLTDGWYQFRQANQLQEGDLVQFQLSDPPDVLVVDIVRGNRLN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4243 252 CDD B3_DNA 163 247 IPR003340 GO:0003677
Tpr2g4243 252 SUPERFAMILY DNA-binding pseudobarrel domain 149 242 IPR015300 -
Tpr2g4243 252 Gene3D - 137 249 IPR015300 -
Tpr2g4243 252 SMART B3_2 149 249 IPR003340 GO:0003677
Tpr2g4243 252 Pfam B3 DNA binding domain 153 248 IPR003340 GO:0003677
Tpr2g4243 252 ProSiteProfiles B3 DNA-binding domain profile. 196 249 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4243 Tpr-Chr2 45564181 45565575 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr2g4243 B3 1.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4243 - K08775 mtr:MTR_1g054480 56.9954