Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4204 ATGATGATTCACTATATATACACTACCTTACTCTTCAATCTTTTTACACCAACTCTCTTTTCAATTCTCACTTCTCTTGATCTCAAAACCATTTTCATCTCCAGTCTCCAACACATAAATATGTTTACTAGTAGTAGCAGCTCTTCTTCTTCACAACCTATTTCGTCGGAACCATCCTCTTCCTCCCGCATGATATCACTGCCGAATTTAGAGGTATCTCATGAGATATCGTTTTCCAACGAGGAGGTGCGGTTAGCTGCAACTACCCCGAAGAAGCGTGCAGGGAGAAAGAAGTTCAAGGAGACTCGCCACCCGGTTTACAGGGGTGTCAGGAGGAGGAACTTAGATAAATGGGTATGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGGACTTTTCCAACGGCCGAGATGGCAGCTAGAGCACATGATGTTGCAGCATTTGCATTGAGGGGTCGTTATGCTTGTCTAAACTTTGCAGACTCGGCTACGCGGCTTCCTATACCTGCAACTACAGAGACAAAAGATATACAAAAGGCAGCTGCAGCAGCTGCTGAGGCTTTTAGACCAAACAATATTTTAATGACTACCGACATTGAAGACACGGCTGAAGCTTCCGCCGCTACAGAGGAGCCGCTTATGTTTAGTTTGGAAGAGGAAGAAGAGGGAGAGTTGAACATTCCAGAGTCATTGAGGAATATGGCACTAATGTCCCCTACACATAGCTTAGAGCATGAGCATAAGCATGAGCATATTAATGAAGATTTTCAAGATGTTGAGGTGTCACTATGGAGTTTTTCAATTTGA 816 0.4363 MMIHYIYTTLLFNLFTPTLFSILTSLDLKTIFISSLQHINMFTSSSSSSSSQPISSEPSSSSRMISLPNLEVSHEISFSNEEVRLAATTPKKRAGRKKFKETRHPVYRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAFALRGRYACLNFADSATRLPIPATTETKDIQKAAAAAAEAFRPNNILMTTDIEDTAEASAATEEPLMFSLEEEEEGELNIPESLRNMALMSPTHSLEHEHKHEHINEDFQDVEVSLWSFSI* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4204 271 Gene3D AP2/ERF domain 106 164 IPR036955 GO:0003700|GO:0006355
Tpr2g4204 271 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 41 271 - -
Tpr2g4204 271 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 41 271 IPR045277 GO:0003700
Tpr2g4204 271 Pfam AP2 domain 105 155 IPR001471 GO:0003700|GO:0006355
Tpr2g4204 271 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Tpr2g4204 271 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Tpr2g4204 271 CDD AP2 107 165 IPR001471 GO:0003700|GO:0006355
Tpr2g4204 271 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Tpr2g4204 271 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Tpr2g4204 271 SUPERFAMILY DNA-binding domain 106 165 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4204 Tpr-Chr2 44987391 44990159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4204 84 269 AP2-EREBP Transcription Factor Family AT4G25470 54.922 6.36e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr2g4204 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4204 - K09286 gmx:547622 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4204 2 44987391 44990159 Tpr1g0702 1 5952060 5953679 PCT