Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4203 ATGTTTCCAACTAACAACTCTTCCTCTTCACACCCCATTTCTTCAATACCTTCCTCTTCGTCACACAAAATATCTCTTCCCTATTTAGATGTCTCTCATGGTATGTCAACTTCCAACGAGGAGGTGCGGTTAGCTGCGAGTACCCCGAAGAAGCGTGCAGGGAGAAAGAAGTTCAAAGAGACTCGCCACCCGGTGTATAGGGGTGTGAGGAGGAGGAACTTAGATAAATGGGTATGTGAAATGAGAGAGCCTAACAAAAAGACTAAGATTTGGCTAGGGACTTTTCCAACAGCCGAAATGGCAGCACGAGCCCATGATGTTGCCGCATTGGCATTGAGAGGTCGCAATGCTTGTCTCAACTTTGCAGACTCAGCTTGGCGGCTTCGTATGCCTACCACTACCAAGACAAAAGATATTCAAAAGGCGGCTTCAGAAGCTGCGGAGGCTTTCAGACCAAACAAGACTTTAATGGTTAATGACACTGACACAATTGAAGTTGTCGCCGCTATAGAGGAGCCGGAGCGGCTTATTTTTAGTATGGAAGAGGAAGAAGAGGGAGAGTTGAACATTCCAGAGTCATTGAAGAATATGGCACTAATGTCCCCAACACATAGCTTAGGGCATGAGTATGAACATATTGATCATGTAGACTTTCAAGATGTTGAGGTGTCATTATGGAGTTTTTCAATTTGA 693 0.4488 MFPTNNSSSSHPISSIPSSSSHKISLPYLDVSHGMSTSNEEVRLAASTPKKRAGRKKFKETRHPVYRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRNACLNFADSAWRLRMPTTTKTKDIQKAASEAAEAFRPNKTLMVNDTDTIEVVAAIEEPERLIFSMEEEEEGELNIPESLKNMALMSPTHSLGHEYEHIDHVDFQDVEVSLWSFSI* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4203 230 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Tpr2g4203 230 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Tpr2g4203 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 230 IPR045277 GO:0003700
Tpr2g4203 230 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Tpr2g4203 230 MobiDBLite consensus disorder prediction 39 58 - -
Tpr2g4203 230 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Tpr2g4203 230 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 230 - -
Tpr2g4203 230 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Tpr2g4203 230 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Tpr2g4203 230 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Tpr2g4203 230 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4203 Tpr-Chr2 44977497 44978377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4203 43 228 AP2-EREBP Transcription Factor Family AT5G51990 57.286 6.59e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g4203 AP2 8.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4203 - K09286 mtr:MTR_6g465850 280.411