Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g4202 ATGTTTGCAACTAACAACTCTTCGTCCGACATGTCATTGTCGAATTCAGATGGCTCTCATTGGATGCCAGTTTCTAACGAGGAGATGCGGTTGGCCGCGACTACTCCTAAGAAGCGTGCGGGAAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTGTATAGGGGTGTGAGGAGGAGGAACAACGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAAAAGACTAAGATTTGGCTAGGGACTTTTCCAACGGTCGAGATGGCAGCTCGAGCCCATGATGTTGCTGCAATGGCATTAAGGGGCTGCTACGCCTGTCTCAACTTTGCTGACTCAGTGTGGCGGCTCCCTAAACCTGCCACCGCTCAAGCAAAAGATATACAAAAGGCAGCAACACTAGCCGCCGAGGCATTTAGGCCAAAGAAGACTTTATTGACTAATGACAACGACATGACTGTAGTTGTCGCCGCCCCAGAAGAACAACCTATGCTTTGTAGGGACGACATGCCAGAATTGATGAGTAATATGGCACTAATGTCTTCTGTGCATAGCTTGGAGAACTCATTCTATGAAGAAGCAGAGTTGTGGAGAAATATGGCACTAATGTCCCCTACACATAGCTTGGAGTATTATGACTATGAATATGTTAATGAAGACTTTCAAGATGCTGAGATATCACTATGGAATTTTTAA 690 0.4623 MFATNNSSSDMSLSNSDGSHWMPVSNEEMRLAATTPKKRAGRKKFKETRHPVYRGVRRRNNDKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGCYACLNFADSVWRLPKPATAQAKDIQKAATLAAEAFRPKKTLLTNDNDMTVVVAAPEEQPMLCRDDMPELMSNMALMSSVHSLENSFYEEAELWRNMALMSPTHSLEYYDYEYVNEDFQDAEISLWNF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g4202 229 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Tpr2g4202 229 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Tpr2g4202 229 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Tpr2g4202 229 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Tpr2g4202 229 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Tpr2g4202 229 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 6 186 - -
Tpr2g4202 229 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 191 228 - -
Tpr2g4202 229 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Tpr2g4202 229 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Tpr2g4202 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 186 IPR045277 GO:0003700
Tpr2g4202 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 191 228 IPR045277 GO:0003700
Tpr2g4202 229 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g4202 Tpr-Chr2 44955369 44956369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g4202 10 142 AP2-EREBP Transcription Factor Family AT5G51990 67.647 3.04e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g4202 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g4202 - - mtr:MTR_6g465990 269.24